Factsheet for GSMUA_Achr2P19220_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P20740_001
GSMUA_Achr9P01520_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G44110.1	GSMUA_AchrUn_...	AT5G07300.1	20706207
AT1G44110.1	GSMUA_Achr6P20740_001	AT5G14170.1	20706207
AT1G44110.1	GSMUA_Achr9P01520_001	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P06960_001	Banana	nucleus, plastid	80.48	80.8
Os05t0237100-01	Rice	extracellular	27.89	71.07
Os12t0298950-00	Rice	nucleus	59.76	67.11
Os01t0233500-01	Rice	nucleus, plastid	66.14	65.35
Os01t0233100-00	Rice	nucleus, plastid	63.74	65.17
Zm00001d032128_P001	Maize	cytosol	20.12	63.92
TraesCS3D01G164600.1	Wheat	plastid	64.94	63.92
TraesCS3A01G157000.1	Wheat	plastid	65.14	63.74
TraesCS3B01G183400.1	Wheat	plastid	64.74	63.73
TraesCS1B01G151800.3	Wheat	nucleus	45.02	63.66
VIT_18s0001g02080.t01	Wine grape	nucleus, plastid	46.61	63.24
Zm00001d040381_P001	Maize	plastid	63.35	59.66
VIT_18s0001g02060.t01	Wine grape	plastid	57.57	58.38
KRH53279	Soybean	plastid	55.58	58.12
KRH64625	Soybean	plastid	55.58	57.64
Zm00001d009011_P001	Maize	nucleus, plastid	58.37	57.45
Solyc11g005090.1.1	Tomato	plastid	54.98	56.33
PGSC0003DMT400015424	Potato	plastid	52.79	56.14
AT1G44110.1	Thale cress	plastid	50.8	55.43
Bra032202.1-P	Field mustard	plastid	46.41	55.21
TraesCS1D01G134100.2	Wheat	nucleus, plastid	52.19	54.93
CDY25649	Canola	plastid	47.41	54.46
CDY65994	Canola	plastid	47.81	54.18
Bra023606.1-P	Field mustard	plastid	45.02	53.94
CDY02719	Canola	plastid	46.02	53.85
CDX85466	Canola	plastid	45.22	53.79
KRH17986	Soybean	plastid	53.78	53.68
KRH16410	Soybean	plastid	53.59	53.37
CDY62408	Canola	nucleus, plasma membrane, plastid	21.71	51.66
CDY41784	Canola	plastid	34.66	51.18
Zm00001d021353_P002	Maize	mitochondrion, nucleus	20.32	51.0
CDX87520	Canola	nucleus	38.84	50.52
GSMUA_Achr2P21530_001	Banana	cytosol, nucleus, plastid	28.69	50.35
CDX88368	Canola	plastid	38.05	50.26
Bra015671.1-P	Field mustard	plastid	38.45	50.0
KXG21616	Sorghum	nucleus, plastid	47.61	49.9
GSMUA_Achr1P14000_001	Banana	nucleus, plasma membrane, plastid	24.5	49.8
GSMUA_Achr10P...	Banana	nucleus	30.48	48.27
TraesCS1A01G138300.1	Wheat	nucleus, plastid	50.0	47.81
AT1G77390.1	Thale cress	plastid	41.24	46.83
GSMUA_Achr6P11130_001	Banana	nucleus	35.06	45.01
CDX92090	Canola	mitochondrion, nucleus	31.67	44.54
Bra022173.1-P	Field mustard	nucleus, plastid	33.27	44.3
GSMUA_Achr2P21520_001	Banana	nucleus	31.08	43.33
Zm00001d010404_P001	Maize	nucleus	38.65	40.0
GSMUA_AchrUn_...	Banana	nucleus	20.52	34.56
GSMUA_Achr5P19270_001	Banana	cytosol	14.14	32.72
GSMUA_Achr3P25340_001	Banana	nucleus	34.86	32.29
GSMUA_Achr3P24980_001	Banana	nucleus	24.1	30.1
GSMUA_Achr4P10090_001	Banana	nucleus	24.1	28.47
GSMUA_Achr11P...	Banana	nucleus	22.91	28.19
GSMUA_Achr10P...	Banana	nucleus	25.1	27.81
GSMUA_Achr8P23970_001	Banana	nucleus	23.71	27.36
GSMUA_Achr7P21380_001	Banana	nucleus	24.5	26.91
GSMUA_Achr8P13320_001	Banana	nucleus	22.51	26.9
GSMUA_Achr5P19110_001	Banana	nucleus	22.71	26.89
GSMUA_Achr11P...	Banana	endoplasmic reticulum, vacuole	23.9	17.96

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSMUA_Achr2G19220_001	EnsemblPlants:GSMUA_Achr2P19220_001
EnsemblPlants:GSMUA_Achr2T19220_001	UniProt:M0S9B3	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292
PANTHER:PTHR10177	PANTHER:PTHR10177:SF239	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0002959C44
SEG:seg	:	:	:	:	:

Description

Cyclin-A1-1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G19220_001]

Coordinates

chr2:-:19354057..19359606

Molecular Weight (calculated)

55397.0 Da

IEP (calculated)

8.336

GRAVY (calculated)

-0.264

Length

502 amino acids

Sequence
(BLAST)

001: MNRRPSISSS ASAASASAKR PAATESASKM PAALAGQAKK RVALANISNQ SKVARNPARP LGAKGANVGI LGAAFFKINT TSSASTKKGS LSSYRDTRSG
101: GSSAVTSAAI KPDTNKSSNK SSLSINNGPK ITVPACLVPC STLKSPGHSR DSVSLDETMS TCDSMRSPDF EYIDKGDCSV ITSLERQANK NLHISEHAAE
201: AGSKLSIDVP MMMEVDDIID VDTNHDDPQF CTTLAGDIYR HLRIAETKKR PSTDFMEKIQ KDINASMRSI LIDWLVEVAE EYRLVPDTLY LTVNYIDRYL
301: SGNEINRQRL QLLGVSCMLI AAKYEEICAP QVEEFCYITD NTYFKDEVFQ MEADVLKYLK YEMTAPTVKC FLRRFIRAAQ GSDEVPALQL EFLASYVAEI
401: SLLEYSLLCY APSLIAASAI FLARFILQPA KRPWNATLDH YTLYKPSDLS DCVKALHRLF CTSSGNNLPA IREKYSQHKY KFVAKKYCPA SIPAEYFQDA
501: RN

Best Arabidopsis Sequence Match ( AT1G44110.1 )
(BLAST)

001: MSNILQNRRS SFSSSTKSSL AKRQAPSSSE NSVKLMPAMT KKRAPLSNIT NQKIASRLQN SDSVHCSNKS AKLKIAPSVC VNASFSSNLQ QSIVPHKVAS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS

Arabidopsis Description

CYCA1-1CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.