Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P21530_001 | Banana | cytosol, nucleus, plastid | 57.78 | 72.73 |
| GSMUA_Achr10P... | Banana | nucleus | 55.83 | 63.41 |
| KRH52056 | Soybean | nucleus | 32.78 | 55.92 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 60.28 | 55.5 |
| CDY06752 | Canola | nucleus | 43.06 | 54.39 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 53.06 | 52.33 |
| PGSC0003DMT400030222 | Potato | nucleus | 50.28 | 51.13 |
| AT5G43080.1 | Thale cress | nucleus | 50.28 | 50.99 |
| CDY22369 | Canola | nucleus | 49.17 | 50.43 |
| Solyc12g088530.1.1 | Tomato | nucleus | 49.44 | 50.28 |
| Bra033658.1-P | Field mustard | nucleus | 49.72 | 50.28 |
| PGSC0003DMT400055428 | Potato | nucleus | 51.39 | 50.27 |
| Solyc12g088500.1.1 | Tomato | nucleus | 48.89 | 49.72 |
| PGSC0003DMT400030176 | Potato | nucleus | 48.89 | 49.44 |
| Solyc04g078310.2.1 | Tomato | nucleus | 50.83 | 49.33 |
| Solyc12g088520.1.1 | Tomato | nucleus | 48.33 | 49.01 |
| Solyc12g088470.1.1 | Tomato | nucleus | 48.89 | 48.89 |
| CDY66770 | Canola | nucleus | 48.89 | 48.62 |
| Bra032220.1-P | Field mustard | nucleus | 47.5 | 47.9 |
| KRH15427 | Soybean | nucleus, plastid | 48.33 | 47.8 |
| CDY06757 | Canola | nucleus, plastid | 48.06 | 47.66 |
| CDY23653 | Canola | nucleus | 47.22 | 47.62 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 48.06 | 47.53 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 47.78 | 47.38 |
| CDY17037 | Canola | nucleus, plastid | 47.78 | 47.25 |
| CDY17091 | Canola | nucleus | 46.94 | 47.21 |
| CDY47595 | Canola | nucleus, plastid | 48.61 | 47.17 |
| CDY47596 | Canola | nucleus | 47.5 | 47.11 |
| Bra040793.1-P | Field mustard | nucleus | 47.5 | 47.11 |
| CDY17039 | Canola | nucleus | 47.22 | 46.83 |
| AT1G47220.1 | Thale cress | nucleus | 42.5 | 46.79 |
| KRH05614 | Soybean | nucleus | 47.5 | 46.59 |
| GSMUA_Achr1P14000_001 | Banana | nucleus, plasma membrane, plastid | 31.94 | 46.56 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 47.78 | 46.49 |
| Bra040710.1-P | Field mustard | nucleus | 47.78 | 46.36 |
| AT1G47210.2 | Thale cress | nucleus | 47.78 | 46.24 |
| KRH61375 | Soybean | nucleus | 41.94 | 46.18 |
| KRH61371 | Soybean | nucleus | 44.44 | 45.85 |
| KRH61369 | Soybean | nucleus | 41.39 | 45.57 |
| KRH52055 | Soybean | nucleus | 44.44 | 44.69 |
| TraesCS4D01G253200.1 | Wheat | nucleus | 30.28 | 44.67 |
| VIT_03s0091g00280.t01 | Wine grape | nucleus | 41.94 | 44.28 |
| KRH61373 | Soybean | nucleus, plastid | 44.72 | 42.93 |
| Solyc10g049360.1.1 | Tomato | nucleus | 45.0 | 42.86 |
| PGSC0003DMT400056625 | Potato | nucleus | 44.44 | 42.11 |
| TraesCS4B01G254000.1 | Wheat | nucleus | 43.61 | 41.76 |
| TraesCS4D01G253900.1 | Wheat | nucleus | 42.5 | 40.26 |
| TraesCS4A01G050700.1 | Wheat | nucleus | 42.5 | 40.26 |
| TraesCS4A01G051300.1 | Wheat | nucleus | 37.22 | 39.07 |
| EER95303 | Sorghum | nucleus, plastid | 40.83 | 38.58 |
| TraesCS4B01G253100.1 | Wheat | nucleus | 36.11 | 38.12 |
| HORVU4Hr1G069310.3 | Barley | nucleus | 41.11 | 35.66 |
| GSMUA_Achr2P19220_001 | Banana | nucleus, plastid | 43.33 | 31.08 |
| GSMUA_Achr5P06960_001 | Banana | nucleus, plastid | 42.5 | 30.6 |
| GSMUA_AchrUn_... | Banana | nucleus | 25.0 | 30.2 |
| GSMUA_Achr5P19270_001 | Banana | cytosol | 17.5 | 29.03 |
| GSMUA_Achr3P25340_001 | Banana | nucleus | 42.78 | 28.41 |
| Os03t0208700-00 | Rice | nucleus | 32.22 | 28.36 |
| Zm00001d048127_P001 | Maize | plastid | 37.5 | 28.18 |
| GSMUA_Achr3P24980_001 | Banana | nucleus | 29.72 | 26.62 |
| GSMUA_Achr4P10090_001 | Banana | nucleus | 28.33 | 24.0 |
| GSMUA_Achr10P... | Banana | nucleus | 29.17 | 23.18 |
| GSMUA_Achr11P... | Banana | nucleus | 25.83 | 22.79 |
| GSMUA_Achr8P13320_001 | Banana | nucleus | 26.39 | 22.62 |
| GSMUA_Achr5P19110_001 | Banana | nucleus | 26.11 | 22.17 |
| GSMUA_Achr8P23970_001 | Banana | nucleus | 26.39 | 21.84 |
| GSMUA_Achr7P21380_001 | Banana | nucleus | 27.22 | 21.44 |
| Os03t0208800-00 | Rice | nucleus | 16.67 | 15.11 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, vacuole | 27.5 | 14.82 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr2G21520_001 | EnsemblPlants:GSMUA_Achr2P21520_001 |
| EnsemblPlants:GSMUA_Achr2T21520_001 | UniProt:M0S9Z3 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF345 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000295CD43 |
Description
Putative cyclin-A3-1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G21520_001]
Coordinates
chr2:-:20953501..20955770
Molecular Weight (calculated)
40708.4 Da
IEP (calculated)
4.958
GRAVY (calculated)
-0.295
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVEENCPPP FTRAAAQLPD EPPLKRKFSE LSTLSDATVP CTPVPSKPRY KARKEEEGSR EAASPQITAP ADGDSAVDDP QMCATHASPM YRYLRSLEVE
101: AKRRPSPNYM DAVQRRVTAG MRGVLVDWLV QVAEEYRLVS DTLYLAVSYI DRFLSFNAIG RERLQLLGVA SMLVAANYQE ICRPSAEEFC YITDNTYTKQ
201: EIVKMESDIL ECLEFAMGGP TIDTFVWRFT GAGQEDGKHW GAQLEFLASY LAELSLVDYG CVQFLPSVIA ASSVFVARFT LNPKSHPWNR KLEQWTEYKA
301: SDLKDCVRAI HDLQSQRRAA SLVAVSEKYK QNKFHCVSML LPYIEIPAIY FDDPEDYNIY
101: AKRRPSPNYM DAVQRRVTAG MRGVLVDWLV QVAEEYRLVS DTLYLAVSYI DRFLSFNAIG RERLQLLGVA SMLVAANYQE ICRPSAEEFC YITDNTYTKQ
201: EIVKMESDIL ECLEFAMGGP TIDTFVWRFT GAGQEDGKHW GAQLEFLASY LAELSLVDYG CVQFLPSVIA ASSVFVARFT LNPKSHPWNR KLEQWTEYKA
301: SDLKDCVRAI HDLQSQRRAA SLVAVSEKYK QNKFHCVSML LPYIEIPAIY FDDPEDYNIY
001: MADEKENCVR MTRAATKRKA SMEAAIDKER INKKRVVLGE LPNLSNIKKS RKATTKQKKK SVSIPTIETL NSDIDTRSDD PQMCGPYVTS IFEYLRQLEV
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI
Arabidopsis Description
CYCA3-1Putative cyclin-A3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.