Factsheet for Os03t0208700-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0549700-01
Os01t0550000-01
Os01t0785700-01
Os01t0935700-02
Os02t0121300-01
Os02t0123100-01
Os02t0537700-01
Os02t0557200-01
Os02t0753800-01
Os03t0136900-01
Os03t0137800-01	nucleus
Os03t0146300-01
Os03t0710800-01
Os03t0815200-01
Os04t0442000-01
Os04t0484900-01
Os04t0608500-01
Os05t0301700-01
Os05t0432200-00
Os06t0221200-01
Os07t0492000-01
Os08t0224700-01
Os09t0133600-01
Os10t0471700-02	nucleus
Os10t0518200-01
Os10t0563700-01
Os11t0217300-01
Os11t0546900-01
Os11t0609600-01
Os12t0481100-01
Os12t0489300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47220.1	Os04t0608500-01	AT1G04810.1	20706207
AT1G47220.1	Os08t0224700-01	AT1G04810.1	20706207
AT1G47220.1	Os11t0609600-01	AT1G22300.1	20706207
AT1G47220.1	Os02t0753800-01	AT1G35720.1	20706207
AT1G47220.1	Os06t0221200-01	AT1G35720.1	20706207
AT1G47220.1	Os02t0557200-01	AT1G59750.1	20706207
AT1G47220.1	Os04t0442000-01	AT1G59750.1	20706207
AT1G47220.1	Os05t0432200-00	AT1G75750.1	20706207
AT1G47220.1	Os03t0146300-01	AT2G27960.1	20706207
AT1G47220.1	Os03t0146300-01	AT2G27970.1	20706207
AT1G47220.1	Os03t0815200-01	AT2G44160.1	20706207
AT1G47220.1	Os02t0537700-01	AT3G11630.1	20706207
AT1G47220.1	Os01t0935700-02	AT3G27240.1	20706207
AT1G47220.1	Os05t0301700-01	AT3G27240.1	20706207
AT1G47220.1	Os02t0123100-01	AT3G48750.1	20706207
AT1G47220.1	Os07t0492000-01	AT4G09320.1	20706207
AT1G47220.1	Os10t0563700-01	AT4G09320.1	20706207
AT1G47220.1	Os02t0121300-01	AT4G34870.1	20706207
AT1G47220.1	Os03t0136900-01	AT4G35830.1	20706207
AT1G47220.1	Os02t0121300-01	AT4G38740.1	20706207
AT1G47220.1	Os01t0549700-01	AT5G11170.1	20706207
AT1G47220.1	Os01t0550000-01	AT5G11170.1	20706207
AT1G47220.1	Os03t0710800-01	AT5G38480.1	20706207
AT1G47220.1	Os11t0546900-01	AT5G38480.1	20706207
AT1G47220.1	Os10t0518200-01	AT5G53560.1	20706207
AT5G43080.1	Os01t0785700-01	AT1G55890.1	20706207
AT5G43080.1	Os11t0217300-01	AT2G05830.1	20706207
AT5G43080.1	Os03t0146300-01	AT2G27970.1	20706207
AT5G43080.1	Os03t0137800-01	AT2G32710.1	20018602
AT5G43080.1	Os10t0471700-02	AT2G32710.1	20018602
AT5G43080.1	Os12t0489300-01	AT3G04620.1	20706207
AT5G43080.1	Os02t0123100-01	AT3G48750.1	20706207
AT5G43080.1	Os09t0133600-01	AT4G04020.1	20706207
AT5G43080.1	Os12t0481100-01	AT4G16630.1	20706207
AT5G43080.1	Os04t0484900-01	AT5G50320.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G253200.1	Wheat	nucleus	30.07	50.41
TraesCS4A01G050700.1	Wheat	nucleus	40.34	43.42
TraesCS4B01G254000.1	Wheat	nucleus	39.85	43.35
TraesCS4D01G253900.1	Wheat	nucleus	39.61	42.63
TraesCS4B01G253100.1	Wheat	nucleus	35.45	42.52
TraesCS4A01G051300.1	Wheat	nucleus	35.21	41.98
GSMUA_Achr2P21530_001	Banana	cytosol, nucleus, plastid	29.34	41.96
KRH52056	Soybean	nucleus	20.78	40.28
EER95303	Sorghum	nucleus, plastid	36.92	39.63
HORVU4Hr1G069310.3	Barley	nucleus	39.61	39.04
CDY06752	Canola	nucleus	26.89	38.6
Os05t0237100-01	Rice	extracellular	17.11	35.53
AT1G47220.1	Thale cress	nucleus	28.12	35.17
KRH61371	Soybean	nucleus	29.34	34.38
Os12t0581800-01	Rice	nucleus, plastid	32.03	34.03
PGSC0003DMT400030176	Potato	nucleus	29.58	33.99
VIT_18s0001g09580.t01	Wine grape	nucleus, plastid	30.32	33.97
PGSC0003DMT400030222	Potato	nucleus	29.34	33.9
KRH61375	Soybean	nucleus	26.89	33.64
Solyc12g088520.1.1	Tomato	nucleus	29.1	33.52
Solyc12g088500.1.1	Tomato	nucleus	28.85	33.33
AT5G43080.1	Thale cress	nucleus	28.85	33.24
KRH61369	Soybean	nucleus	26.41	33.03
Solyc12g088470.1.1	Tomato	nucleus	28.85	32.78
Solyc12g088530.1.1	Tomato	nucleus	28.36	32.77
KRH15427	Soybean	nucleus, plastid	29.1	32.69
Solyc04g078310.2.1	Tomato	nucleus	29.58	32.61
PGSC0003DMT400055428	Potato	nucleus	29.34	32.61
CDY22369	Canola	nucleus	27.87	32.48
GSMUA_Achr2P21520_001	Banana	nucleus	28.36	32.22
CDY17091	Canola	nucleus	27.87	31.84
Bra033658.1-P	Field mustard	nucleus	27.63	31.74
VIT_03s0091g00280.t01	Wine grape	nucleus	26.41	31.67
KRH05614	Soybean	nucleus	28.36	31.61
Solyc10g049360.1.1	Tomato	nucleus	28.85	31.22
PGSC0003DMT400056625	Potato	nucleus	28.85	31.05
KRH52055	Soybean	nucleus	27.14	31.01
Bra040710.1-P	Field mustard	nucleus	28.12	31.0
Bra040792.1-P	Field mustard	nucleus, plastid	27.14	30.49
CDY17037	Canola	nucleus, plastid	27.14	30.49
Zm00001d048127_P001	Maize	plastid	35.7	30.48
CDY47595	Canola	nucleus, plastid	27.63	30.46
CDY66770	Canola	nucleus	26.89	30.39
Bra040793.1-P	Field mustard	nucleus	26.89	30.3
CDY47596	Canola	nucleus	26.89	30.3
Bra032220.1-P	Field mustard	nucleus	26.41	30.25
Os03t0208800-00	Rice	nucleus	29.34	30.23
KRH61373	Soybean	nucleus, plastid	27.63	30.13
Bra040753.1-P	Field mustard	nucleus, plastid	26.65	30.03
CDY06757	Canola	nucleus, plastid	26.65	30.03
CDY17039	Canola	nucleus	26.65	30.03
CDY23653	Canola	nucleus	26.16	29.97
AT1G47210.2	Thale cress	nucleus	27.14	29.84
AT1G47230.2	Thale cress	nucleus, plastid	26.41	29.19
Os12t0298950-00	Rice	nucleus	23.47	21.48
Os06t0726800-01	Rice	nucleus	21.76	21.24
Os12t0502300-01	Rice	nucleus, plastid	25.43	21.22
Os03t0607600-00	Rice	nucleus	31.05	20.89
Os01t0233100-00	Rice	nucleus, plastid	24.69	20.57
Os01t0281200-01	Rice	nucleus	21.27	20.57
Os04t0563700-01	Rice	mitochondrion	20.54	20.0
Os01t0233500-01	Rice	nucleus, plastid	24.69	19.88
Os02t0627800-00	Rice	cytosol, mitochondrion, peroxisome	17.85	18.43
Os05t0493500-00	Rice	nucleus	20.78	17.45

Protein Annotations

Gene3D:1.10.472.10	MapMan:35.1	UniProt:A0A0N7KGT2	ProteinID:BAS82889.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0007049	GO:GO:0008150	GO:GO:0009987	GO:GO:0051301	EnsemblPlantsGene:Os03g0208700	EnsemblPlants:Os03t0208700-00
PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF231
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000393B935	SEG:seg	:

Description

Similar to cyclin-A2. (Os03t0208700-00)

Coordinates

chr3:+:5672848..5675991

Molecular Weight (calculated)

46086.4 Da

IEP (calculated)

7.497

GRAVY (calculated)

-0.145

Length

409 amino acids

Sequence
(BLAST)

001: PSPPHAAADD EAEDEVGGQD GGRGGGCGGG GGGESRRRSR QPVPDAAQLA VVPYVEDIDR YLRSLEAEQT RRPMINYVQE IQGGIINMDV RGILVDWMAD
101: VAYVFNLQEE TLHHAVSYVD RFLSKIAFPG DKLKLLGTTA LFVASKYEEI HPPHVRNFSA VTVNTYTTQQ VSKMELDILR FLNFDVGSPT VITFLRKFLT
201: SCCGGNNSSN RKLELMCNYL AELSLLDDYY IRFLPSIVAA ACLFVGKFTL NPNTRPWNLS VQRNTGYKVS DIEDCIHAIH DLQAGRKWSN LKAVRIKYKD
301: DEARAASSIS LLVVLHALMH ILTMFCSRLF EHCTVWVRVD NYSTRKHQGV FSQGSQVREQ LKCPCSIFAN LQGGVEKYMV SRIYMCVFDL PMLFLVNRQH
401: LRFSRIDDI

Best Arabidopsis Sequence Match ( AT1G47210.2 )
(BLAST)

001: MTEQEICVRV TRAAAKRKAS TAMGIDGDRV NKKRVVLGEL LNVSNVNLLA NLNQKKETQK PKRNLKPPPA KQIKSAPVAI IDLESKSDID SRSDDPQMCG
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI

Arabidopsis Description

CYCA3-2Cyclin-A3-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6A9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.