Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G253100.1 | Wheat | nucleus | 84.43 | 60.41 |
| TraesCS4A01G051300.1 | Wheat | nucleus | 83.2 | 59.18 |
| KRH52056 | Soybean | nucleus | 38.11 | 44.08 |
| CDY06752 | Canola | nucleus | 47.13 | 40.35 |
| TraesCS4D01G253900.1 | Wheat | nucleus | 59.84 | 38.42 |
| GSMUA_Achr2P21530_001 | Banana | cytosol, nucleus, plastid | 44.26 | 37.76 |
| EER95303 | Sorghum | nucleus, plastid | 58.61 | 37.53 |
| AT1G47220.1 | Thale cress | nucleus | 44.67 | 33.33 |
| Solyc12g088530.1.1 | Tomato | nucleus | 47.54 | 32.77 |
| PGSC0003DMT400030176 | Potato | nucleus | 47.54 | 32.58 |
| TraesCS5D01G084700.1 | Wheat | nucleus | 50.0 | 32.28 |
| Solyc12g088500.1.1 | Tomato | nucleus | 46.72 | 32.2 |
| PGSC0003DMT400030222 | Potato | nucleus | 46.72 | 32.2 |
| CDY17091 | Canola | nucleus | 47.13 | 32.12 |
| CDY22369 | Canola | nucleus | 45.9 | 31.91 |
| AT5G43080.1 | Thale cress | nucleus | 46.31 | 31.83 |
| Solyc12g088520.1.1 | Tomato | nucleus | 45.49 | 31.27 |
| Bra033658.1-P | Field mustard | nucleus | 45.49 | 31.18 |
| CDY17037 | Canola | nucleus, plastid | 46.31 | 31.04 |
| KRH15427 | Soybean | nucleus, plastid | 46.31 | 31.04 |
| Bra040710.1-P | Field mustard | nucleus | 47.13 | 31.0 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 46.31 | 30.96 |
| Solyc12g088470.1.1 | Tomato | nucleus | 45.49 | 30.83 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 45.9 | 30.77 |
| Solyc04g078310.2.1 | Tomato | nucleus | 46.72 | 30.73 |
| KRH52055 | Soybean | nucleus | 45.08 | 30.73 |
| PGSC0003DMT400055428 | Potato | nucleus | 46.31 | 30.71 |
| KRH61375 | Soybean | nucleus | 40.98 | 30.58 |
| TraesCS4D01G076900.1 | Wheat | nucleus | 46.31 | 30.54 |
| VIT_03s0091g00280.t01 | Wine grape | nucleus | 42.62 | 30.5 |
| GSMUA_Achr2P21520_001 | Banana | nucleus | 44.67 | 30.28 |
| Os03t0208700-00 | Rice | nucleus | 50.41 | 30.07 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 45.49 | 30.0 |
| KRH05614 | Soybean | nucleus | 45.08 | 29.97 |
| CDY47595 | Canola | nucleus, plastid | 45.49 | 29.92 |
| KRH61371 | Soybean | nucleus | 42.62 | 29.8 |
| KRH61369 | Soybean | nucleus | 39.75 | 29.66 |
| CDY66770 | Canola | nucleus | 43.44 | 29.28 |
| PGSC0003DMT400056625 | Potato | nucleus | 45.49 | 29.21 |
| Bra040793.1-P | Field mustard | nucleus | 43.03 | 28.93 |
| CDY47596 | Canola | nucleus | 43.03 | 28.93 |
| Bra032220.1-P | Field mustard | nucleus | 42.21 | 28.85 |
| KRH61373 | Soybean | nucleus, plastid | 44.26 | 28.8 |
| CDY17039 | Canola | nucleus | 42.62 | 28.65 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 42.62 | 28.65 |
| CDY23653 | Canola | nucleus | 41.8 | 28.57 |
| Solyc10g049360.1.1 | Tomato | nucleus | 44.26 | 28.57 |
| CDY06757 | Canola | nucleus, plastid | 42.21 | 28.37 |
| AT1G47210.2 | Thale cress | nucleus | 43.03 | 28.23 |
| Zm00001d048127_P001 | Maize | plastid | 55.33 | 28.18 |
| TraesCS1D01G134100.2 | Wheat | nucleus, plastid | 42.62 | 21.8 |
| TraesCS3D01G164600.1 | Wheat | plastid | 41.8 | 20.0 |
| TraesCS7D01G536000.1 | Wheat | nucleus | 34.02 | 19.81 |
| TraesCS3D01G529100.1 | Wheat | plastid | 40.57 | 19.6 |
| TraesCS5D01G121100.2 | Wheat | plastid | 40.16 | 19.29 |
| TraesCS3D01G195200.1 | Wheat | plastid | 30.74 | 18.16 |
| TraesCS2D01G401700.1 | Wheat | nucleus, plastid | 31.15 | 18.05 |
| TraesCS1D01G309300.1 | Wheat | nucleus, plastid | 31.97 | 17.89 |
| TraesCS1D01G309400.1 | Wheat | nucleus | 31.56 | 17.62 |
| TraesCS3D01G326600.1 | Wheat | nucleus | 31.56 | 16.92 |
| Os03t0208800-00 | Rice | nucleus | 25.82 | 15.87 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G253200.1 | EnsemblPlantsGene:TraesCS4D01G253200 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF231 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | SMART:SM00385 |
| SMART:SM01332 | SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.1 | : | : |
Description
No Description!
Coordinates
chr4D:-:421950800..421952319
Molecular Weight (calculated)
28039.5 Da
IEP (calculated)
10.024
GRAVY (calculated)
0.069
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTTQEDINP KMRAFLVDWL VYVALTFRLP ADTLHLAVSY VDRFLTANVI SQDKLQLLGV TALIVAAKYE DGIFVHEVRR YRNVAANTYT RQQVVKMESD
101: ILKSLNFEMG SPTARTFLRR YITVCRGRDR AKAKRLEFLC SYLAELSLLD YDCIKFNPSV VAAACLFLAR FTISPTARPW NLTLQRNTKY KVSDLKSCIL
201: MIRKLQLNGT YPGLKGEAIK VKYNDREVRC AFPSFLAFAC VLFF
101: ILKSLNFEMG SPTARTFLRR YITVCRGRDR AKAKRLEFLC SYLAELSLLD YDCIKFNPSV VAAACLFLAR FTISPTARPW NLTLQRNTKY KVSDLKSCIL
201: MIRKLQLNGT YPGLKGEAIK VKYNDREVRC AFPSFLAFAC VLFF
001: MVSKKDKQIH SDHNPQDASP VEWAEIRHKL LAFQENIQSG SDIDARSDDP QMCGLYVSDI YEYLRELEVK PKLRPLHDYI EKIQEDITPS KRGVLVDWLV
101: EVAEEFELVS ETLYLTVSYI DRFLSLKMVN EHWLQLVGVS AMFIASKYEE KRRPKVEDFC YITANTYTKQ DVLKMEEDIL LALEFELGRP TTNTFLRRFI
201: RVAQEDFKVP NLQLEPLCCY LSELSMLDYS CVKFVPSLLA ASAVFLARFI ILPNQHPWSQ MLEECTKYKA ADLQVCVEIM LDLYLSRSEG ASKAVREKYK
301: QHKFQYVAAI PVYQELPVTF WEDVVTI
101: EVAEEFELVS ETLYLTVSYI DRFLSLKMVN EHWLQLVGVS AMFIASKYEE KRRPKVEDFC YITANTYTKQ DVLKMEEDIL LALEFELGRP TTNTFLRRFI
201: RVAQEDFKVP NLQLEPLCCY LSELSMLDYS CVKFVPSLLA ASAVFLARFI ILPNQHPWSQ MLEECTKYKA ADLQVCVEIM LDLYLSRSEG ASKAVREKYK
301: QHKFQYVAAI PVYQELPVTF WEDVVTI
Arabidopsis Description
CYCA3-3Cyclin-A3-3 [Source:UniProtKB/Swiss-Prot;Acc:A0MEB5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.