Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G351400.1 | Wheat | cytosol, endoplasmic reticulum | 96.6 | 90.72 |
| TraesCS1B01G363000.1 | Wheat | cytosol | 96.17 | 90.32 |
| HORVU1Hr1G081810.8 | Barley | cytosol, plasma membrane | 88.31 | 86.92 |
| TraesCS2A01G430100.2 | Wheat | golgi | 86.72 | 78.46 |
| Os04t0608500-01 | Rice | plasma membrane | 25.19 | 76.95 |
| KXG27072 | Sorghum | plasma membrane | 81.83 | 76.39 |
| Zm00001d026265_P002 | Maize | plasma membrane | 80.98 | 74.56 |
| Zm00001d002373_P006 | Maize | cytosol, plasma membrane | 79.81 | 74.5 |
| VIT_00s0215g00040.t01 | Wine grape | extracellular | 49.52 | 72.81 |
| GSMUA_Achr1P10550_001 | Banana | cytosol | 74.92 | 69.73 |
| VIT_10s0042g00800.t01 | Wine grape | cytosol, plastid | 74.28 | 69.55 |
| VIT_00s0125g00350.t01 | Wine grape | cytosol | 13.6 | 69.19 |
| CDX79472 | Canola | cytosol, plastid | 72.69 | 68.47 |
| CDY12178 | Canola | cytosol | 72.16 | 68.45 |
| AT2G32730.1 | Thale cress | cytosol | 72.79 | 68.23 |
| Bra022899.1-P | Field mustard | cytosol, plastid | 72.58 | 68.03 |
| CDX84724 | Canola | cytosol, plastid | 72.58 | 67.96 |
| CDY19162 | Canola | extracellular | 72.26 | 67.73 |
| PGSC0003DMT400040763 | Potato | cytosol | 71.41 | 67.67 |
| Bra021810.1-P | Field mustard | cytosol, plastid | 72.16 | 67.63 |
| KRH60454 | Soybean | endoplasmic reticulum | 72.26 | 67.59 |
| KRH41754 | Soybean | nucleus | 72.26 | 67.59 |
| Bra005560.1-P | Field mustard | plastid | 72.37 | 67.56 |
| CDY23791 | Canola | cytosol, plastid | 72.26 | 67.46 |
| PGSC0003DMT400076219 | Potato | endoplasmic reticulum | 71.94 | 67.43 |
| Solyc05g053650.2.1 | Tomato | endoplasmic reticulum | 71.09 | 67.37 |
| AT1G04810.1 | Thale cress | cytosol | 71.31 | 67.03 |
| Solyc09g091750.2.1 | Tomato | plastid | 71.52 | 67.03 |
| CDY60623 | Canola | endoplasmic reticulum, golgi | 68.33 | 66.36 |
| VIT_00s0215g00050.t01 | Wine grape | cytosol | 16.37 | 51.33 |
| TraesCS6A01G116500.1 | Wheat | golgi, unclear | 13.92 | 14.64 |
| TraesCS7A01G421700.1 | Wheat | cytosol | 13.6 | 14.55 |
| TraesCS7A01G421600.1 | Wheat | mitochondrion | 12.54 | 14.44 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:19.2.6.2.2.2 | InterPro:26S_Psome_Rpn2 | InterPro:ARM-like | InterPro:ARM-type_fold | ncoils:Coil |
| GO:GO:0000502 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0019538 | GO:GO:0030234 | GO:GO:0042176 |
| InterPro:IPR011989 | PFAM:PF01851 | PFAM:PF13646 | PIRSF:PIRSF015947 | PANTHER:PTHR10943 | PANTHER:PTHR10943:SF10 |
| InterPro:Proteasome/cyclosome_rpt | SUPFAM:SSF48371 | EnsemblPlantsGene:TraesCS1A01G348400 | EnsemblPlants:TraesCS1A01G348400.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr1A:-:533698643..533703650
Molecular Weight (calculated)
101820.0 Da
IEP (calculated)
5.011
GRAVY (calculated)
-0.071
Length
941 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAATVSSAG GILAMLHEPA EELKLHALAS LNSVVHLFYP EISTSIPAIE SMYEDDEFDQ RQLAALVVSK VFYYLGELND ALSYALGAGP LFDVSEDSDY
101: AQALLAKALD EYASFKTRAS KAMEEEENVD PRLETIVERM LKRCILDGKY QQAMGMAVEC RRLDKLEGAI ARCANIHGAL SYCINLSHQC VSHREYRSEV
201: LRCLVKIYQT LPHPDYLSIC QCLMVLGEPE TVADILDTLL SGSQDDALIA YQIAFDLVEN ENQAFLLNVG NRLDSQTPGQ PALPVDQTVN AGATSTEPAG
301: DVQMGDGTTT SNRNAHPVDP NEAAHADRLA KLKAILSGEK SIQLTLQFLY SHNRSDLLIL KTIKQAVETS GNVCHSATIC SNAIMHAGTT VDTFLRENLE
401: WLSKATNWAK FSATAGLGVI HRGHLQQGRA LMAPYLPQNG AVGGGSPYSE GGALYALGLI HANHGEGIKQ FLRESLCNTS AEVIQHGACL GLGLASLGTA
501: DEEVFEDIKN VLYTDSAVAG EAAGIGMGLL MVGTASEKAG EMLAYAHDTQ HEKIIRGLAL GIALTMYGRE EEADTLIEQM TRDQDPILRY GGMYALALAY
601: RGTANNKAIH QLLHFAVSDV SDDVCRTAVM GLGFVLYNEP EQTPRIVSLL SESYNPHVRY GAALAVGISC AGTGLSDAIS LLEPLTSDVV DFVRQGALIA
701: MAMVMIQTNE SFDSHVGTFR RQLEKIILDK HEDIMSKMGA ILASGILDAG GRNVTIKLRS RNKHDKLTAV IGLAVFTQFW HWYPLLYFIS LAFSPTAIIG
801: LNSNLEVPKF EFMSHAKPSL FEYPKPTTEQ TTTSAVELPT AILSTYAKAK SRAKKDAESK AAANQEKTAA EAESKANQEK TTEDASGSTS GKAADAMQVD
901: STAEKKAAEP EPAFQILSNP ACVVPLQEKF IKFIEGSRYV P
101: AQALLAKALD EYASFKTRAS KAMEEEENVD PRLETIVERM LKRCILDGKY QQAMGMAVEC RRLDKLEGAI ARCANIHGAL SYCINLSHQC VSHREYRSEV
201: LRCLVKIYQT LPHPDYLSIC QCLMVLGEPE TVADILDTLL SGSQDDALIA YQIAFDLVEN ENQAFLLNVG NRLDSQTPGQ PALPVDQTVN AGATSTEPAG
301: DVQMGDGTTT SNRNAHPVDP NEAAHADRLA KLKAILSGEK SIQLTLQFLY SHNRSDLLIL KTIKQAVETS GNVCHSATIC SNAIMHAGTT VDTFLRENLE
401: WLSKATNWAK FSATAGLGVI HRGHLQQGRA LMAPYLPQNG AVGGGSPYSE GGALYALGLI HANHGEGIKQ FLRESLCNTS AEVIQHGACL GLGLASLGTA
501: DEEVFEDIKN VLYTDSAVAG EAAGIGMGLL MVGTASEKAG EMLAYAHDTQ HEKIIRGLAL GIALTMYGRE EEADTLIEQM TRDQDPILRY GGMYALALAY
601: RGTANNKAIH QLLHFAVSDV SDDVCRTAVM GLGFVLYNEP EQTPRIVSLL SESYNPHVRY GAALAVGISC AGTGLSDAIS LLEPLTSDVV DFVRQGALIA
701: MAMVMIQTNE SFDSHVGTFR RQLEKIILDK HEDIMSKMGA ILASGILDAG GRNVTIKLRS RNKHDKLTAV IGLAVFTQFW HWYPLLYFIS LAFSPTAIIG
801: LNSNLEVPKF EFMSHAKPSL FEYPKPTTEQ TTTSAVELPT AILSTYAKAK SRAKKDAESK AAANQEKTAA EAESKANQEK TTEDASGSTS GKAADAMQVD
901: STAEKKAAEP EPAFQILSNP ACVVPLQEKF IKFIEGSRYV P
0001: MAAAMVSSAG GLLAMLNEPH PSLKLHALSY LIRLVDQFWP EISTSVPIIE SLYEDEEFDQ HQRQLAALLA SKVFYYLGEL NDSLSYALGA GSLFDVSEDS
0101: DYIHTLLSKA IDEYAILRSK AVESSEVVEI DPRLVAIVER MLDKCITDGK YQQAMGIAIE CRRLDKLEEA IIKSENVQGT LSYCINVSHS FVNQREYRHE
0201: VLRLLVNVYQ KLASPDYLSI CQCLMFLDEP QGVASILEKL LRSENKDDAL LAFQISFDLV QNEHQAFLMS VRDRLPAPKT RPVEAIQAVE TSTAQNENTA
0301: GDVQMADETP SQTIVHETDP VDAVYAERLT KAKGILSGET SIQLTLQFLY SHNKSDLLIL KTIKQSVEMR NSVCHSATIY ANAIMHAGTT VDTFLRENLD
0401: WLSRATNWAK FSATAGLGVI HRGHLQQGRS LMAPYLPQGG AGGGGSPYSE GGALYALGLI HANHGEGIKQ FLRDSLRSTS VEVIQHGACL GLGLAALGTA
0501: DEDIYDDIKS VLYTDSAVAG EAAGISMGLL LVGTATDKAS EMLAYAHETQ HEKIIRGLAL GIALTVYGRE EGADTLIEQM TRDQDPIIRY GGMYALALAY
0601: SGTANNKAIR QLLHFAVSDV SDDVRRTAVL ALGFVLYSDP EQTPRIVSLL SESYNPHVRY GAALAVGISC AGTGLSEAIS LLEPLTSDVV DFVRQGALIA
0701: MAMVMVQISE ASDSRVGAFR RQLEKIILDK HEDTMSKMGA ILASGILDAG GRNVTIRLLS KTKHDKVTAV IGLTVFSQFW YWYPLIYFIS LAFSPTAFIG
0801: LNYDLKVPKF EFMSHAKPSL FEYPKPTTVA TANTAAKLPT AVLSTSAKAK AKAKKEAEQK AKAENSGNEA GKANAASDEK EAESMQVDST ATTVEKKVEP
0901: EATFEILVNP ARVVPSQEKY IKLMEDSRYV PMKLAPSGFV LLRDLRPHEP EVLSLTDAPT STASPAVGAE AAGQAQQAAT TSAMAIDDEP QPPQAFEYAS
1001: P
0101: DYIHTLLSKA IDEYAILRSK AVESSEVVEI DPRLVAIVER MLDKCITDGK YQQAMGIAIE CRRLDKLEEA IIKSENVQGT LSYCINVSHS FVNQREYRHE
0201: VLRLLVNVYQ KLASPDYLSI CQCLMFLDEP QGVASILEKL LRSENKDDAL LAFQISFDLV QNEHQAFLMS VRDRLPAPKT RPVEAIQAVE TSTAQNENTA
0301: GDVQMADETP SQTIVHETDP VDAVYAERLT KAKGILSGET SIQLTLQFLY SHNKSDLLIL KTIKQSVEMR NSVCHSATIY ANAIMHAGTT VDTFLRENLD
0401: WLSRATNWAK FSATAGLGVI HRGHLQQGRS LMAPYLPQGG AGGGGSPYSE GGALYALGLI HANHGEGIKQ FLRDSLRSTS VEVIQHGACL GLGLAALGTA
0501: DEDIYDDIKS VLYTDSAVAG EAAGISMGLL LVGTATDKAS EMLAYAHETQ HEKIIRGLAL GIALTVYGRE EGADTLIEQM TRDQDPIIRY GGMYALALAY
0601: SGTANNKAIR QLLHFAVSDV SDDVRRTAVL ALGFVLYSDP EQTPRIVSLL SESYNPHVRY GAALAVGISC AGTGLSEAIS LLEPLTSDVV DFVRQGALIA
0701: MAMVMVQISE ASDSRVGAFR RQLEKIILDK HEDTMSKMGA ILASGILDAG GRNVTIRLLS KTKHDKVTAV IGLTVFSQFW YWYPLIYFIS LAFSPTAFIG
0801: LNYDLKVPKF EFMSHAKPSL FEYPKPTTVA TANTAAKLPT AVLSTSAKAK AKAKKEAEQK AKAENSGNEA GKANAASDEK EAESMQVDST ATTVEKKVEP
0901: EATFEILVNP ARVVPSQEKY IKLMEDSRYV PMKLAPSGFV LLRDLRPHEP EVLSLTDAPT STASPAVGAE AAGQAQQAAT TSAMAIDDEP QPPQAFEYAS
1001: P
Arabidopsis Description
RPN2B26S proteasome non-ATPase regulatory subunit 1 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAT0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.