Factsheet for VIT_00s0215g00050.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0125g00320.t01	Wine grape	mitochondrion, plasma membrane	11.0	35.11
VIT_10s0042g00800.t01	Wine grape	cytosol, plastid	82.33	24.58
Solyc09g091750.2.1	Tomato	plastid	71.33	21.31
PGSC0003DMT400040763	Potato	cytosol	70.33	21.25
Solyc05g053650.2.1	Tomato	endoplasmic reticulum	70.33	21.25
PGSC0003DMT400076219	Potato	endoplasmic reticulum	71.0	21.22
GSMUA_Achr1P10550_001	Banana	cytosol	69.0	20.47
Zm00001d002373_P006	Maize	cytosol, plasma membrane	68.67	20.44
Os08t0224700-01	Rice	plasma membrane	66.33	20.16
KXG27072	Sorghum	plasma membrane	66.67	19.84
Zm00001d026265_P002	Maize	plasma membrane	66.0	19.37
EES13543	Sorghum	endoplasmic reticulum	63.33	19.23
Zm00001d024342_P001	Maize	plasma membrane	63.0	19.07
Zm00001d049357_P001	Maize	plasma membrane	62.0	18.83
TraesCS2B01G450800.2	Wheat	cytosol, endoplasmic reticulum	64.0	18.64
TraesCS2D01G427700.2	Wheat	endoplasmic reticulum, plasma membrane	64.0	18.62
TraesCS2A01G430100.2	Wheat	golgi	64.0	18.46
TraesCS1D01G351400.1	Wheat	cytosol, endoplasmic reticulum	60.33	18.06
TraesCS1B01G363000.1	Wheat	cytosol	59.67	17.86
HORVU1Hr1G081810.8	Barley	cytosol, plasma membrane	56.0	17.57
TraesCS1A01G348400.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	51.33	16.37
VIT_00s0125g00350.t01	Wine grape	cytosol	6.33	10.27
VIT_12s0028g03130.t01	Wine grape	cytosol	9.33	3.15
VIT_03s0038g02720.t01	Wine grape	cytosol	1.0	2.26
VIT_00s0215g00040.t01	Wine grape	extracellular	1.67	0.78
VIT_00s0125g00380.t01	Wine grape	cytosol	0.0	0.0
Os04t0608500-01	Rice	plasma membrane	0.0	0.0

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	InterPro:ARM-like	ProteinID:CBI33043	ProteinID:CBI33043.3	UniProt:D7TRC0
EMBL:FN596016	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152
GO:GO:0008540	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0034515
GO:GO:0043161	InterPro:IPR011989	PANTHER:PTHR10943	PANTHER:PTHR10943:SF10	TMHMM:TMhelix	UniParc:UPI0001BE3C21
ArrayExpress:VIT_00s0215g00050	EnsemblPlantsGene:VIT_00s0215g00050	EnsemblPlants:VIT_00s0215g00050.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chrUn:+:13543311..13545327

Molecular Weight (calculated)

32436.5 Da

IEP (calculated)

8.707

GRAVY (calculated)

-0.307

Length

300 amino acids

Sequence
(BLAST)

001: MAMVMVQISE SSDSRVGTFR RQLEKIILDK HEDTMSKMGA ILASGILDAG GRNVTIRLLS KTKHDKVTAV VGLAVFSQFW YWYPLIYFVS LSFSPTAFIG
101: LNYDLKVPRF EFLSHAKPSL FEYPRPTTVP TATSTVKLPT AVLSTSAKAK ARAKKEAEQK GNAEKSAGAE SSSTSQSSGR GKSSAEKDGD SMQVDSPSEK
201: KAEPEASFEI LTNPARVVPA QEKFIKFLEE SRYVPVKLAP SGFVLLKDLR PTEPEVLSLT DTPSSTASPA SGSATGQQAA ASAMAVDEEP QPPQPFEYTS

Best Arabidopsis Sequence Match ( AT2G32730.1 )
(BLAST)

0001: MATPMVSSAG GLLAMLNEPH PVLKLHALSN LNNLVDQFWP EISTSVPIIE SLYEDEEFDL HQRQLAALLV SKVFYYLGEL NDSLSYALGA GPLFDVSEDS
0101: DYVHTLLAKA IDEYASLRSK AVESNEMVDI DPRLEAIVER MLGKCISDGK YQQAMGIAIE CRRLDKLEEA IIKSDNVQGT LSYCINVSHS FVNRREYRHE
0201: VLSLLVKVYQ KLPSPDYLSI CQCLMFLDEP QGVASILEKL LRSENKDDAL LALQIAFDLV ENEHQAFLLS VRDRLPAPKT RAVEATQAVE TTIAPNENPS
0301: GDVQMADETP AQTIVHETDP VDATYAERLT KIKGILSGET SIQLTLQFLY SHNKSDLLIL KTIKQSVEMR NSVCHSATIY ANAIMHAGTT VDTFLRENLD
0401: WLSRATNWAK FSATAGLGVI HRGHLQQGRS LMAPYLPQGG AGGGGSPYSE GGALYALGLI HANHGEGIKQ FLRDSLRSTN VEVIQHGACL GLGLSALGTA
0501: DEEIYDDVKS VLYTDSAVAG EAAGISMGLL LVGTATEKAS EMLAYAHETQ HEKIIRGLAL GIALTVYGRE EGADTLIEQM TRDQDPIIRY GGMYALALAY
0601: SGTANNKAIR QLLHFAVSDV SDDVRRTAVL ALGFVLYSDP EQTPRIVSLL SESYNPHVRY GAALAVGISC AGTGLSEAIS LLEPLTSDVV DFVRQGALIA
0701: MAMVMVQISE ASDSRVGVFR RQLEKIILDK HEDTMSKMGA ILASGILDAG GRNVTIRLLS KTKHDKVTAV IGLAVFSQFW YWYPLIYFIS LAFSPTAFIG
0801: LNYDLKVPKF EFMSHAKPSL FEYPKPTTVP TANTAVKLPT AVLSTSVKAK ARAKKEAEQK AIAEKTSGPE KPVNESGSGK GKASTEKEGD SMQVDSPAAV
0901: EKKAPEPEPA FEILVNPARV VPAQEKYIKL LDDSRYVPVK LAPSGFVLLK DLREHEPEVL SLTDAPTSTA SPATGTAAAA QGTPASAMAV DDEPQPPQAF
1001: EYAS

Arabidopsis Description

RPN2A26S proteasome non-ATPase regulatory subunit 1 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O48844]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.