Factsheet for Solyc05g053650.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 4
plastid 2
mitochondrion 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 2
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol, mitochondrion, nucleus, plastid
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040763	Potato	cytosol	99.09	99.09
Solyc09g091750.2.1	Tomato	plastid	90.23	89.24
VIT_10s0042g00800.t01	Wine grape	cytosol, plastid	84.29	83.28
VIT_00s0215g00040.t01	Wine grape	extracellular	53.27	82.66
KRH41754	Soybean	nucleus	82.58	81.51
KRH60454	Soybean	endoplasmic reticulum	82.07	81.01
AT2G32730.1	Thale cress	cytosol	81.57	80.68
CDX79472	Canola	cytosol, plastid	80.46	79.98
CDY19162	Canola	extracellular	80.66	79.78
Bra021810.1-P	Field mustard	cytosol, plastid	80.56	79.68
Bra022899.1-P	Field mustard	cytosol, plastid	80.46	79.58
CDX84724	Canola	cytosol, plastid	80.36	79.4
CDY23791	Canola	cytosol, plastid	80.46	79.27
CDY12178	Canola	cytosol	79.15	79.23
AT1G04810.1	Thale cress	cytosol	79.56	78.92
Bra005560.1-P	Field mustard	plastid	79.96	78.77
CDY60623	Canola	endoplasmic reticulum, golgi	75.93	77.81
GSMUA_Achr1P10550_001	Banana	cytosol	76.64	75.27
KXG27072	Sorghum	plasma membrane	75.23	74.11
Os04t0608500-01	Rice	plasma membrane	22.86	73.7
Zm00001d026265_P002	Maize	plasma membrane	74.72	72.6
EES13543	Sorghum	endoplasmic reticulum	72.1	72.47
VIT_00s0125g00350.t01	Wine grape	cytosol	13.49	72.43
Os08t0224700-01	Rice	plasma membrane	71.9	72.34
Zm00001d049357_P001	Maize	plasma membrane	71.9	72.27
Zm00001d024342_P001	Maize	plasma membrane	71.9	72.05
Zm00001d002373_P006	Maize	cytosol, plasma membrane	72.71	71.63
TraesCS1A01G348400.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	67.37	71.09
HORVU1Hr1G081810.8	Barley	cytosol, plasma membrane	68.18	70.82
VIT_00s0215g00050.t01	Wine grape	cytosol	21.25	70.33
TraesCS2A01G430100.2	Wheat	golgi	73.51	70.19
TraesCS2D01G427700.2	Wheat	endoplasmic reticulum, plasma membrane	72.81	70.13
TraesCS2B01G450800.2	Wheat	cytosol, endoplasmic reticulum	72.71	70.1
TraesCS1B01G363000.1	Wheat	cytosol	70.09	69.46
TraesCS1D01G351400.1	Wheat	cytosol, endoplasmic reticulum	69.79	69.16
Solyc10g008180.1.1	Tomato	plastid	13.7	18.6
Solyc07g053650.2.1	Tomato	nucleus	14.8	17.88
Solyc10g008170.2.1	Tomato	cytosol	1.21	5.94

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.6.2.2.2	InterPro:26S_Psome_Rpn2	InterPro:ARM-like	InterPro:ARM-type_fold	ncoils:Coil
GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150
GO:GO:0008152	GO:GO:0008540	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0019538	GO:GO:0030234	GO:GO:0034515	GO:GO:0042176	GO:GO:0043161
GO:GO:0050790	InterPro:IPR011989	UniProt:K4C245	PFAM:PF01851	PFAM:PF13646	PIRSF:PIRSF015947
PANTHER:PTHR10943	PANTHER:PTHR10943:SF10	InterPro:Proteasome/cyclosome_rpt	SUPFAM:SSF48371	EnsemblPlantsGene:Solyc05g053650.2	EnsemblPlants:Solyc05g053650.2.1
TMHMM:TMhelix	UniParc:UPI000276651D	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:+:63711424..63719393

Molecular Weight (calculated)

108045.0 Da

IEP (calculated)

5.099

GRAVY (calculated)

-0.132

Length

993 amino acids

Sequence
(BLAST)

001: MATTVSSAGG LLAMLNESHP QLKLHALSNL NAFVDYFWPE ISSSVALIES LYEDEEFAQR QLAALVASKV FYHLGEHNDS LSYALGAGPL FDVNEESDYV
101: HTVLAKALDK YASHKTKAAE SNDEAVKVDP RLEAIVERML EKCIVDRKYQ QAIGMAIECR RLDKVAEAIV RSDNVDATLA YCSNVSHNFV SRRVYRSEVL
201: RLLVEVYEGT PSPNYLSMCQ WLMFLDKPEN VASILEKLLR SENKDDVLLA FQIAFDLVEN EHQAFLLNVR DRLSSPEVQP SEPAEPNTAQ TGDATAAEDV
301: QMAEENQPLI ETRVDPREAI YAERLGKIKG ILSGETSIKL TLQFLYSHNK SDLLILKTIK QSVEMRNSVC HSATIYANAI MHAGTTVDTF LRENLDWLSR
401: ATNWAKFSAT AGLGVIHCGH LQQGRSLMAP YLPQGAAGGG GSPYSEGGAL YALGLIHANH GEGIKQFLRE SLRSTNVEVI QHGACLGLGL AALGTADEDI
501: YDDIKTVLYT DSAVAGEAAG IGMGLLMVGT ASEKAGEMLA YAHETQHEKI IRGLALGIAL TVYGREEEAD TLIEQMTRDQ DPILRYGGMY ALAMAYRGTA
601: NNKAIRQLLH FAVSDVSDDV RRTAVLALGF VMYSEPEQMP RIVSLLSESY NPHVRYGAAL AVGISCAGTG LSEAISLLEP LTSDVVDFVR QGALIAMAMV
701: MVQISEASDS RVGAFRRQLE KIILDKHEDT MSKMGAILAS GILDAGGRNV TIKLLSKSKH DKITAVVGLA VFSQFWYWYP LIYFVSLAFS PTALIGLNYD
801: LKVPKFDFVS QAKPSLFEYP KPTTVATTSS AVKLPTAVLS TSVRAKARAS KKEAEKANAE KASGASTSAA TTSDKGKSTS KDGESMQVDT PAEKKNEPEP
901: SFEILTNPAR VVPTQEKYIK FLEESRYLPI KSSSSGFVLL KDLRPDEPEV LALTDTPSST TSSTGGSAGQ QNSTSAVAAD EEPQPPQAFE YTS

Best Arabidopsis Sequence Match ( AT2G32730.1 )
(BLAST)

0001: MATPMVSSAG GLLAMLNEPH PVLKLHALSN LNNLVDQFWP EISTSVPIIE SLYEDEEFDL HQRQLAALLV SKVFYYLGEL NDSLSYALGA GPLFDVSEDS
0101: DYVHTLLAKA IDEYASLRSK AVESNEMVDI DPRLEAIVER MLGKCISDGK YQQAMGIAIE CRRLDKLEEA IIKSDNVQGT LSYCINVSHS FVNRREYRHE
0201: VLSLLVKVYQ KLPSPDYLSI CQCLMFLDEP QGVASILEKL LRSENKDDAL LALQIAFDLV ENEHQAFLLS VRDRLPAPKT RAVEATQAVE TTIAPNENPS
0301: GDVQMADETP AQTIVHETDP VDATYAERLT KIKGILSGET SIQLTLQFLY SHNKSDLLIL KTIKQSVEMR NSVCHSATIY ANAIMHAGTT VDTFLRENLD
0401: WLSRATNWAK FSATAGLGVI HRGHLQQGRS LMAPYLPQGG AGGGGSPYSE GGALYALGLI HANHGEGIKQ FLRDSLRSTN VEVIQHGACL GLGLSALGTA
0501: DEEIYDDVKS VLYTDSAVAG EAAGISMGLL LVGTATEKAS EMLAYAHETQ HEKIIRGLAL GIALTVYGRE EGADTLIEQM TRDQDPIIRY GGMYALALAY
0601: SGTANNKAIR QLLHFAVSDV SDDVRRTAVL ALGFVLYSDP EQTPRIVSLL SESYNPHVRY GAALAVGISC AGTGLSEAIS LLEPLTSDVV DFVRQGALIA
0701: MAMVMVQISE ASDSRVGVFR RQLEKIILDK HEDTMSKMGA ILASGILDAG GRNVTIRLLS KTKHDKVTAV IGLAVFSQFW YWYPLIYFIS LAFSPTAFIG
0801: LNYDLKVPKF EFMSHAKPSL FEYPKPTTVP TANTAVKLPT AVLSTSVKAK ARAKKEAEQK AIAEKTSGPE KPVNESGSGK GKASTEKEGD SMQVDSPAAV
0901: EKKAPEPEPA FEILVNPARV VPAQEKYIKL LDDSRYVPVK LAPSGFVLLK DLREHEPEVL SLTDAPTSTA SPATGTAAAA QGTPASAMAV DDEPQPPQAF
1001: EYAS

Arabidopsis Description

RPN2A26S proteasome non-ATPase regulatory subunit 1 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O48844]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.