Factsheet for Solyc07g053650.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 3
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008370.2.1
Solyc01g099760.2.1
Solyc01g111700.1.1
Solyc02g070510.2.1
Solyc02g081700.1.1
Solyc02g084920.2.1
Solyc04g012040.2.1
Solyc04g051370.2.1
Solyc04g079200.2.1
Solyc04g080590.2.1
Solyc05g013030.1.1
Solyc05g018570.2.1
Solyc05g018590.2.1
Solyc05g053140.2.1
Solyc05g053650.2.1
Solyc06g063140.2.1
Solyc06g063220.2.1
Solyc06g082630.2.1
Solyc06g082660.2.1
Solyc06g083620.2.1
Solyc07g009140.2.1
Solyc07g047770.2.1
Solyc07g053650.2.1
Solyc07g054690.1.1
Solyc08g016510.2.1
Solyc08g066330.1.1
Solyc08g082700.2.1
Solyc09g042290.1.1
Solyc09g082320.2.1
Solyc09g090720.2.1
Solyc09g091750.2.1
Solyc10g008180.1.1
Solyc11g012670.1.1
Solyc11g069150.1.1
Solyc12g009140.1.1
Solyc12g055760.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20580.1	Solyc05g053650.2.1	AT1G04810.1	20706207
AT2G20580.1	Solyc09g091750.2.1	AT1G04810.1	20706207
AT2G20580.1	Solyc01g111700.1.1	AT1G20200.1	20706207
AT2G20580.1	Solyc05g013030.1.1	AT1G29150.1	20706207
AT2G20580.1	Solyc06g063220.2.1	AT1G51650.1	20706207
AT2G20580.1	Solyc12g055760.1.1	AT1G51650.1	20706207
AT2G20580.1	Solyc06g063140.2.1	AT1G53750.1	20706207
AT2G20580.1	Solyc08g082700.2.1	AT1G64520.1	20706207
AT2G20580.1	Solyc06g083620.2.1	AT2G20140.1	20706207
AT2G20580.1	Solyc05g053650.2.1	AT2G32730.1	20706207
AT2G20580.1	Solyc09g091750.2.1	AT2G32730.1	20706207
AT2G20580.1	Solyc01g099760.2.1	AT3G05530.1	20706207
AT2G20580.1	Solyc01g008370.2.1	AT3G11270.1	20706207
AT2G20580.1	Solyc08g066330.1.1	AT3G48750.1	20706207
AT2G20580.1	Solyc09g042290.1.1	AT4G16390.1	20706207
AT2G20580.1	Solyc11g012670.1.1	AT4G16390.1	20706207
AT2G20580.1	Solyc07g009140.2.1	AT4G24820.1	20706207
AT2G20580.1	Solyc07g054690.1.1	AT4G28230.1	20706207
AT2G20580.1	Solyc01g008370.2.1	AT5G05780.1	20706207
AT2G20580.1	Solyc05g018570.2.1	AT5G20000.1	20706207
AT2G20580.1	Solyc05g018590.2.1	AT5G20000.1	20706207
AT2G20580.1	Solyc04g079200.2.1	AT5G23540.1	20706207
AT2G20580.1	Solyc07g047770.2.1	AT5G35750.1	18642946
AT2G20580.1	Solyc05g053140.2.1	AT5G45620.1	20706207
AT2G20580.1	Solyc09g090720.2.1	AT5G45620.1	20706207
AT2G20580.1	Solyc06g082630.2.1	AT5G58290.1	20706207
AT2G20580.1	Solyc06g082660.2.1	AT5G58290.1	20706207
AT4G28470.1	Solyc05g053650.2.1	AT1G04810.1	14623884
AT4G28470.1	Solyc09g091750.2.1	AT1G04810.1	14623884
AT4G28470.1	Solyc01g111700.1.1	AT1G20200.1	14623884
AT4G28470.1	Solyc05g013030.1.1	AT1G29150.1	14623884
AT4G28470.1	Solyc06g063140.2.1	AT1G53750.1	14623884
AT4G28470.1	Solyc02g070510.2.1	AT1G53850.1	14623884
AT4G28470.1	Solyc08g016510.2.1	AT1G53850.1	14623884
AT4G28470.1	Solyc11g069150.1.1	AT1G56450.1	14623884
AT4G28470.1	Solyc08g082700.2.1	AT1G64520.1	14623884
AT4G28470.1	Solyc01g111700.1.1	AT1G75990.1	14623884
AT4G28470.1	Solyc12g009140.1.1	AT2G05840.1	14623884
AT4G28470.1	Solyc07g053650.2.1	AT2G20580.1	14623884
AT4G28470.1	Solyc10g008180.1.1	AT2G20580.1	14623884
AT4G28470.1	Solyc05g053650.2.1	AT2G32730.1	14623884
AT4G28470.1	Solyc09g091750.2.1	AT2G32730.1	14623884
AT4G28470.1	Solyc01g099760.2.1	AT3G05530.1	14623884
AT4G28470.1	Solyc02g070510.2.1	AT3G14290.1	14623884
AT4G28470.1	Solyc08g016510.2.1	AT3G14290.1	14623884
AT4G28470.1	Solyc02g081700.1.1	AT3G22110.1	14623884
AT4G28470.1	Solyc09g082320.2.1	AT3G22630.1	14623884
AT4G28470.1	Solyc02g084920.2.1	AT3G60820.1	14623884
AT4G28470.1	Solyc07g009140.2.1	AT4G24820.1	14623884
AT4G28470.1	Solyc07g053650.2.1	AT4G28470.1	14623884
AT4G28470.1	Solyc10g008180.1.1	AT4G28470.1	14623884
AT4G28470.1	Solyc06g083620.2.1	AT4G29040.1	14623884
AT4G28470.1	Solyc01g008370.2.1	AT5G05780.1	14623884
AT4G28470.1	Solyc05g018570.2.1	AT5G19990.1	14623884
AT4G28470.1	Solyc05g018590.2.1	AT5G19990.1	14623884
AT4G28470.1	Solyc05g018570.2.1	AT5G20000.1	14623884
AT4G28470.1	Solyc05g018590.2.1	AT5G20000.1	14623884
AT4G28470.1	Solyc04g079200.2.1	AT5G23540.1	14623884
AT4G28470.1	Solyc12g009140.1.1	AT5G35590.1	14623884
AT4G28470.1	Solyc04g080590.2.1	AT5G42790.1	14623884
AT4G28470.1	Solyc05g053140.2.1	AT5G45620.1	14623884
AT4G28470.1	Solyc09g090720.2.1	AT5G45620.1	14623884
AT4G28470.1	Solyc06g082630.2.1	AT5G58290.1	14623884
AT4G28470.1	Solyc06g082660.2.1	AT5G58290.1	14623884
AT4G28470.1	Solyc04g012040.2.1	AT5G64760.1	14623884
AT4G28470.1	Solyc04g051370.2.1	AT5G64760.1	14623884

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024306	Potato	cytosol	99.88	91.63
VIT_12s0028g03130.t01	Wine grape	cytosol	89.29	82.47
KRH55899	Soybean	endoplasmic reticulum, nucleus	87.47	81.24
KRH25643	Soybean	endoplasmic reticulum, nucleus	87.1	80.9
AT2G20580.1	Thale cress	cytosol	84.06	77.55
Bra024200.1-P	Field mustard	cytosol	83.7	77.22
CDY29907	Canola	extracellular	83.58	77.1
Bra011030.1-P	Field mustard	cytosol	83.58	77.1
CDY35187	Canola	cytosol, extracellular	83.58	77.02
CDY38389	Canola	cytosol, extracellular	83.45	76.91
CDX92875	Canola	extracellular	83.33	76.88
CDY05774	Canola	cytosol	82.97	76.12
Solyc10g008180.1.1	Tomato	plastid	67.52	75.92
AT4G28470.1	Thale cress	cytosol	81.75	75.42
GSMUA_Achr11P...	Banana	cytosol	80.29	74.32
CDY31952	Canola	plasma membrane	76.89	73.83
Os02t0146700-02	Rice	plasma membrane	80.29	73.5
Bra036488.1-P	Field mustard	cytosol, extracellular, plasma membrane	74.09	73.11
TraesCS6D01G105500.1	Wheat	golgi	79.32	72.85
TraesCS6A01G116500.1	Wheat	golgi, unclear	79.32	72.85
Zm00001d053881_P001	Maize	mitochondrion, plastid	78.83	72.65
HORVU6Hr1G021020.1	Barley	cytosol	79.32	72.61
EES04513	Sorghum	cytosol	78.95	72.6
Zm00001d015259_P001	Maize	cytosol	78.1	72.13
TraesCS6B01G144500.1	Wheat	cytosol	79.2	72.01
Os09t0326800-01	Rice	plasma membrane	76.64	70.71
Os06t0699900-01	Rice	plasma membrane	77.01	70.26
Bra010366.1-P	Field mustard	cytosol	75.55	70.09
CDX97442	Canola	cytosol	75.06	69.88
CDY14239	Canola	cytosol, extracellular	75.3	69.71
KRH57774	Soybean	endoplasmic reticulum, plasma membrane	23.72	66.78
TraesCS7A01G421600.1	Wheat	mitochondrion	60.58	60.95
TraesCS7D01G413900.1	Wheat	mitochondrion	61.56	60.89
TraesCS7B01G322000.1	Wheat	cytosol	62.77	58.64
TraesCS7B01G321900.1	Wheat	cytosol	61.8	58.59
TraesCS7A01G421700.1	Wheat	cytosol	62.41	58.3
TraesCS7D01G413800.1	Wheat	cytosol	42.46	56.29
HORVU7Hr1G097500.16	Barley	endoplasmic reticulum, golgi, plasma membrane	33.33	46.76
Solyc10g008170.2.1	Tomato	cytosol	11.07	45.05
GSMUA_Achr1P10580_001	Banana	cytosol, nucleus, plasma membrane	3.04	17.24
Solyc05g053650.2.1	Tomato	endoplasmic reticulum	17.88	14.8
Solyc09g091750.2.1	Tomato	plastid	17.88	14.64

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.6.2.2.1	InterPro:26S_Psome_Rpn1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152
GO:GO:0008540	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163
GO:GO:0030234	GO:GO:0034515	GO:GO:0042176	GO:GO:0043161	GO:GO:0050790	InterPro:IPR011989
UniProt:K4CFR0	PFAM:PF01851	PIRSF:PIRSF015965	PANTHER:PTHR10943	PANTHER:PTHR10943:SF8	InterPro:Proteasome/cyclosome_rpt
SUPFAM:SSF48371	EnsemblPlantsGene:Solyc07g053650.2	EnsemblPlants:Solyc07g053650.2.1	UniParc:UPI000276C011	SEG:seg	:

Description

No Description!

Coordinates

chr7:+:62096478..62107240

Molecular Weight (calculated)

90289.0 Da

IEP (calculated)

4.972

GRAVY (calculated)

0.002

Length

822 amino acids

Sequence
(BLAST)

001: MRQEIRTSTS SMTSVPKPLK FLRPHYGTLK GFYEKMPDSD LKKLMADILS VLALTMSAEG ERESLKYRLV GSQGEIGSWG HEYVRNLAGE ISQEYVKRQS
101: EEASIDDLME LVQQIVAFHM KHNAEPEAVD LLMEVEDLDL LVEHVDNTNY KRTCSYLTSS AKYLPGPDDM LVLDIAYTIY MKFEEYPSAL VTALYLDNTQ
201: YVKQVFTSCD DLLRKKQFCY ILARHGQTFE LDEEMCAEDE EREGLQEIIN NTKLSEGYLT LARDIEVMEA KTPDDIYKPH LLDGRASAGA SVDSARQNLA
301: STFVNAFVNA GFGQDKLMTV PSEASSGGAS TSWLFKNKEH GKASAAASLG MILLWDVDSG LAQIDKYFHS TDTHVIAGAL LGVGIVNCGI KNECDPALAL
401: LAEYIDKEDP SIRIGAIMGL GLAYAGSQNE QIRSKLTPIL GDSKASLDVL AFTAISLGLV YVGSCNEEIA QAIIFALMER SESELGEPFA RLLPLGLGLL
501: YLGKQESVEA TAEVSKTFNE KIRKHCDMTL LSCAYAGTGN VLKVQHFLGQ CAQHFEKGET FQGPAVLGIA MVAMAEELGL EMAIRSLEHL LQYGEQNIRR
601: AVPLALALLC ISNPKVNVMD TLSRLSHDSD SEVAMAAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKEANL LFCVRIAQGL VHLGKGLLTL SPYHSEHFLL
701: SPTALAGLVT LLHACLDMKA IILGKYHYIL YFLTLAMQPR MLLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGD RAELATEKYI
801: PLSPILEGFV ILKENPDYRD DQ

Best Arabidopsis Sequence Match ( AT2G20580.1 )
(BLAST)

001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E

Arabidopsis Description

RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.