Factsheet for Solyc12g055760.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074206	Potato	mitochondrion, plastid	95.71	95.71
Solyc06g063220.2.1	Tomato	plastid	91.43	91.43
CDY46549	Canola	mitochondrion	82.86	82.86
Bra014294.1-P	Field mustard	mitochondrion	81.43	81.43
AT1G51650.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	81.43	81.43
CDY32413	Canola	plastid	78.57	78.57
CDX82211	Canola	plastid	78.57	78.57
KRH44639	Soybean	mitochondrion	72.86	77.27
CDX87828	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	77.14	77.14
CDY43919	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	77.14	77.14
KRH47013	Soybean	mitochondrion	77.14	77.14
Bra030431.1-P	Field mustard	cytosol	61.43	76.79
GSMUA_Achr2P05010_001	Banana	cytosol	58.57	73.21
CDY27534	Canola	mitochondrion, plastid	72.86	72.86
CDY37308	Canola	mitochondrion, plastid	75.71	72.6
EES01052	Sorghum	mitochondrion	68.57	69.57
Bra023896.1-P	Field mustard	mitochondrion	71.43	69.44
Zm00001d044441_P002	Maize	mitochondrion	68.57	68.57
VIT_10s0092g00280.t01	Wine grape	mitochondrion	52.86	68.52
Os08t0250200-01	Rice	mitochondrion	65.71	66.67
TraesCS3A01G291800.1	Wheat	mitochondrion	60.0	66.67
TraesCS3B01G326400.1	Wheat	plastid	58.57	65.08
CDY02587	Canola	endoplasmic reticulum, extracellular	67.14	64.38
VIT_09s0018g01930.t01	Wine grape	mitochondrion, plastid	65.71	63.89
TraesCS3D01G291500.1	Wheat	mitochondrion	62.86	63.77
Zm00001d011314_P001	Maize	mitochondrion	65.71	63.01
TraesCS5A01G017000.1	Wheat	mitochondrion	61.43	62.32
TraesCS5B01G015000.1	Wheat	mitochondrion	61.43	62.32
GSMUA_Achr9P19600_001	Banana	mitochondrion	62.86	61.97
HORVU1Hr1G030420.1	Barley	mitochondrion	54.29	60.32
VIT_19s0014g04520.t01	Wine grape	cytosol	40.0	57.14
HORVU5Hr1G004830.5	Barley	mitochondrion	55.71	45.35
VIT_18s0089g00420.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	45.71	42.67
GSMUA_Achr1P15900_001	Banana	plastid	60.0	32.56
CDX98292	Canola	cytosol	62.86	26.67

Protein Annotations

Gene3D:1.10.1620.20	MapMan:2.4.6.2.6	InterPro:ATP_synth_F1_esu_mt	InterPro:ATP_synth_F1_esu_sf_mt	GO:GO:0000275	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005743	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015986	GO:GO:0016020	GO:GO:0016787	GO:GO:0016887
GO:GO:0046933	GO:GO:0099132	InterPro:IPR036742	UniProt:K4DFQ7	PFAM:PF04627	PANTHER:PTHR12448
PANTHER:PTHR12448:SF0	SUPFAM:SSF48690	EnsemblPlantsGene:Solyc12g055760.1	EnsemblPlants:Solyc12g055760.1.1	UniParc:UPI0002769B92	:

Description

No Description!

Coordinates

chr12:-:61744724..61747663

Molecular Weight (calculated)

7907.4 Da

IEP (calculated)

9.591

GRAVY (calculated)

-0.664

Length

70 amino acids

Sequence
(BLAST)

1: MASNAAAPFW RSAGMTYITY SNLCANLVRN CLKEPYKAEA LSRERVHYSI SKWADGKPQK PTIRSDTPEN

Best Arabidopsis Sequence Match ( AT1G51650.1 )
(BLAST)

1: MASNAAVPFW RAAGMTYISY SNICANIVRN CLKEPHKAEA LTREKVHFSL SKWADGKPQK PVLRSDTPEV

Arabidopsis Description

ATP synthase subunit epsilon, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q96253]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.