CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27534	Canola	mitochondrion, plastid	93.15	97.14
CDX82211	Canola	plastid	87.67	91.43
CDY32413	Canola	plastid	87.67	91.43
CDY43919	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	83.56	87.14
Bra023896.1-P	Field mustard	mitochondrion	84.93	86.11
CDY46549	Canola	mitochondrion	82.19	85.71
CDX87828	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	82.19	85.71
AT1G51650.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	80.82	84.29
PGSC0003DMT400074206	Potato	mitochondrion, plastid	75.34	78.57
Solyc12g055760.1.1	Tomato	plastid	72.6	75.71
Solyc06g063220.2.1	Tomato	plastid	72.6	75.71
TraesCS3A01G291800.1	Wheat	mitochondrion	64.38	74.6
PGSC0003DMT400023749	Potato	mitochondrion, plastid	71.23	74.29
CDY02587	Canola	endoplasmic reticulum, extracellular	73.97	73.97
TraesCS3B01G326400.1	Wheat	plastid	63.01	73.02
VIT_10s0092g00280.t01	Wine grape	mitochondrion	53.42	72.22
PGSC0003DMT400068159	Potato	mitochondrion	68.49	71.43
EES01052	Sorghum	mitochondrion	67.12	71.01
Zm00001d044441_P002	Maize	mitochondrion	67.12	70.0
GSMUA_Achr2P05010_001	Banana	cytosol	53.42	69.64
TraesCS3D01G291500.1	Wheat	mitochondrion	65.75	69.57
VIT_09s0018g01930.t01	Wine grape	mitochondrion, plastid	67.12	68.06
Os08t0250200-01	Rice	mitochondrion	63.01	66.67
Zm00001d011314_P001	Maize	mitochondrion	65.75	65.75
GSMUA_Achr9P19600_001	Banana	mitochondrion	61.64	63.38
VIT_19s0014g04520.t01	Wine grape	cytosol	39.73	59.18
TraesCS5A01G017000.1	Wheat	mitochondrion	53.42	56.52
HORVU1Hr1G030420.1	Barley	mitochondrion	47.95	55.56
TraesCS5B01G015000.1	Wheat	mitochondrion	52.05	55.07
HORVU5Hr1G004830.5	Barley	mitochondrion	53.42	45.35
VIT_18s0089g00420.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	45.21	44.0
GSMUA_Achr1P15900_001	Banana	plastid	63.01	35.66
CDX98292	Canola	cytosol	69.86	30.91

Protein Annotations

Gene3D:1.10.1620.20	MapMan:2.4.6.2.6	GO:A0A078HKB9	UniProt:A0A078HKB9	InterPro:ATP_synth_F1_esu_mt	InterPro:ATP_synth_F1_esu_sf_mt
EnsemblPlants:CDY37308	ProteinID:CDY37308	ProteinID:CDY37308.1	GO:GO:0000275	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015986	GO:GO:0016020	GO:GO:0016787	GO:GO:0046933	GO:GO:0099132	EnsemblPlantsGene:GSBRNA2T00063831001
InterPro:IPR036742	PFAM:PF04627	PANTHER:PTHR12448	PANTHER:PTHR12448:SF0	SUPFAM:SSF48690	UniParc:UPI0004EEF0F2

Description

BnaA01g25280DBnaA01g25280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKB9]

Coordinates

chrLK032397:-:251508..252196

Molecular Weight (calculated)

8209.9 Da

IEP (calculated)

9.741

GRAVY (calculated)

-0.338

Length

73 amino acids

Sequence
(BLAST)

1: MASSAAVPFW RAAGMTYITY SNICANLVRK CLKEPFKAES MNREKVHFSL SKWADGKPQK PVLRSDAPEV SDF

Best Arabidopsis Sequence Match ( AT1G51650.1 )
(BLAST)

1: MASNAAVPFW RAAGMTYISY SNICANIVRN CLKEPHKAEA LTREKVHFSL SKWADGKPQK PVLRSDTPEV

Arabidopsis Description

ATP synthase subunit epsilon, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q96253]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.