Factsheet for PGSC0003DMT400074206

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g055760.1.1	Tomato	plastid	95.71	95.71
PGSC0003DMT400023749	Potato	mitochondrion, plastid	94.29	94.29
PGSC0003DMT400068159	Potato	mitochondrion	90.0	90.0
CDY46549	Canola	mitochondrion	85.71	85.71
Bra014294.1-P	Field mustard	mitochondrion	84.29	84.29
AT1G51650.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	84.29	84.29
CDX82211	Canola	plastid	81.43	81.43
CDY32413	Canola	plastid	81.43	81.43
Bra030431.1-P	Field mustard	cytosol	64.29	80.36
CDX87828	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	80.0	80.0
CDY43919	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	80.0	80.0
KRH44639	Soybean	mitochondrion	74.29	78.79
KRH47013	Soybean	mitochondrion	77.14	77.14
CDY27534	Canola	mitochondrion, plastid	75.71	75.71
CDY37308	Canola	mitochondrion, plastid	78.57	75.34
GSMUA_Achr2P05010_001	Banana	cytosol	58.57	73.21
EES01052	Sorghum	mitochondrion	70.0	71.01
Bra023896.1-P	Field mustard	mitochondrion	72.86	70.83
VIT_10s0092g00280.t01	Wine grape	mitochondrion	54.29	70.37
Zm00001d044441_P002	Maize	mitochondrion	70.0	70.0
TraesCS3A01G291800.1	Wheat	mitochondrion	61.43	68.25
Os08t0250200-01	Rice	mitochondrion	67.14	68.12
CDY02587	Canola	endoplasmic reticulum, extracellular	70.0	67.12
TraesCS3B01G326400.1	Wheat	plastid	60.0	66.67
VIT_09s0018g01930.t01	Wine grape	mitochondrion, plastid	68.57	66.67
TraesCS3D01G291500.1	Wheat	mitochondrion	64.29	65.22
Zm00001d011314_P001	Maize	mitochondrion	65.71	63.01
TraesCS5A01G017000.1	Wheat	mitochondrion	61.43	62.32
TraesCS5B01G015000.1	Wheat	mitochondrion	61.43	62.32
GSMUA_Achr9P19600_001	Banana	mitochondrion	62.86	61.97
HORVU1Hr1G030420.1	Barley	mitochondrion	55.71	61.9
VIT_19s0014g04520.t01	Wine grape	cytosol	42.86	61.22
HORVU5Hr1G004830.5	Barley	mitochondrion	57.14	46.51
VIT_18s0089g00420.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	47.14	44.0
GSMUA_Achr1P15900_001	Banana	plastid	61.43	33.33
CDX98292	Canola	cytosol	64.29	27.27

Protein Annotations

Gene3D:1.10.1620.20	EntrezGene:102590160	MapMan:2.4.6.2.6	InterPro:ATP_synth_F1_esu_mt	InterPro:ATP_synth_F1_esu_sf_mt	GO:GO:0000275
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015986	GO:GO:0016020	GO:GO:0016787	GO:GO:0046933
GO:GO:0099132	InterPro:IPR036742	UniProt:M1CTC7	PFAM:PF04627	EnsemblPlantsGene:PGSC0003DMG400028842	PGSC:PGSC0003DMG400028842
EnsemblPlants:PGSC0003DMT400074206	PANTHER:PTHR12448	PANTHER:PTHR12448:SF0	SUPFAM:SSF48690	UniParc:UPI000295AA8E	RefSeq:XP_006362106.1

Description

ATP synthase epsilon chain, mitochondrial [Source:PGSC_GENE;Acc:PGSC0003DMG400028842]

Coordinates

chr12:-:53292024..53294888

Molecular Weight (calculated)

7880.3 Da

IEP (calculated)

9.173

GRAVY (calculated)

-0.666

Length

70 amino acids

Sequence
(BLAST)

1: MASNAAAPFW RSAGMTYITY SNLCANLVRN CLKEPYKAEA LSREKVHYSI SKWADGKPQK PTLRSDTPED

Best Arabidopsis Sequence Match ( AT1G51650.1 )
(BLAST)

1: MASNAAVPFW RAAGMTYISY SNICANIVRN CLKEPHKAEA LTREKVHFSL SKWADGKPQK PVLRSDTPEV

Arabidopsis Description

ATP synthase subunit epsilon, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q96253]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.