CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37308	Canola	mitochondrion, plastid	97.14	93.15
CDX82211	Canola	plastid	88.57	88.57
CDY32413	Canola	plastid	88.57	88.57
CDY43919	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	87.14	87.14
CDY46549	Canola	mitochondrion	85.71	85.71
CDX87828	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	85.71	85.71
Bra023896.1-P	Field mustard	mitochondrion	85.71	83.33
AT1G51650.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	81.43	81.43
PGSC0003DMT400074206	Potato	mitochondrion, plastid	75.71	75.71
Solyc12g055760.1.1	Tomato	plastid	72.86	72.86
Solyc06g063220.2.1	Tomato	plastid	72.86	72.86
TraesCS3A01G291800.1	Wheat	mitochondrion	64.29	71.43
PGSC0003DMT400023749	Potato	mitochondrion, plastid	71.43	71.43
CDY02587	Canola	endoplasmic reticulum, extracellular	74.29	71.23
EES01052	Sorghum	mitochondrion	70.0	71.01
VIT_10s0092g00280.t01	Wine grape	mitochondrion	54.29	70.37
Zm00001d044441_P002	Maize	mitochondrion	70.0	70.0
TraesCS3B01G326400.1	Wheat	plastid	62.86	69.84
GSMUA_Achr2P05010_001	Banana	cytosol	55.71	69.64
PGSC0003DMT400068159	Potato	mitochondrion	68.57	68.57
Os08t0250200-01	Rice	mitochondrion	65.71	66.67
TraesCS3D01G291500.1	Wheat	mitochondrion	65.71	66.67
Zm00001d011314_P001	Maize	mitochondrion	68.57	65.75
VIT_09s0018g01930.t01	Wine grape	mitochondrion, plastid	67.14	65.28
GSMUA_Achr9P19600_001	Banana	mitochondrion	64.29	63.38
VIT_19s0014g04520.t01	Wine grape	cytosol	40.0	57.14
TraesCS5A01G017000.1	Wheat	mitochondrion	54.29	55.07
HORVU1Hr1G030420.1	Barley	mitochondrion	48.57	53.97
TraesCS5B01G015000.1	Wheat	mitochondrion	52.86	53.62
HORVU5Hr1G004830.5	Barley	mitochondrion	54.29	44.19
VIT_18s0089g00420.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	44.29	41.33
GSMUA_Achr1P15900_001	Banana	plastid	65.71	35.66
CDX98292	Canola	cytosol	71.43	30.3

Protein Annotations

Gene3D:1.10.1620.20	MapMan:2.4.6.2.6	GO:A0A078GQT3	UniProt:A0A078GQT3	InterPro:ATP_synth_F1_esu_mt	InterPro:ATP_synth_F1_esu_sf_mt
EnsemblPlants:CDY27534	ProteinID:CDY27534	ProteinID:CDY27534.1	GO:GO:0000275	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015986	GO:GO:0016020	GO:GO:0016787	GO:GO:0046933	GO:GO:0099132	EnsemblPlantsGene:GSBRNA2T00038215001
InterPro:IPR036742	PFAM:PF04627	PANTHER:PTHR12448	PANTHER:PTHR12448:SF0	SUPFAM:SSF48690	UniParc:UPI0004EF465A

Description

BnaC01g32170DBnaC01g32170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQT3]

Coordinates

chrLK032206:-:49606..50195

Molecular Weight (calculated)

7889.5 Da

IEP (calculated)

9.773

GRAVY (calculated)

-0.340

Length

70 amino acids

Sequence
(BLAST)

1: MASSAAVPFW RAAGMTYITY SNICANLVRK CLREPFKAES MNREKVHFSL SKWADGKPEK PVLRSDAPEV

Best Arabidopsis Sequence Match ( AT1G51650.1 )
(BLAST)

1: MASNAAVPFW RAAGMTYISY SNICANIVRN CLKEPHKAEA LTREKVHFSL SKWADGKPQK PVLRSDTPEV

Arabidopsis Description

ATP synthase subunit epsilon, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q96253]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.