Factsheet for PGSC0003DMT400023749

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074206	Potato	mitochondrion, plastid	94.29	94.29
Solyc06g063220.2.1	Tomato	plastid	94.29	94.29
PGSC0003DMT400068159	Potato	mitochondrion	91.43	91.43
AT1G51650.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	81.43	81.43
Bra014294.1-P	Field mustard	mitochondrion	80.0	80.0
CDY46549	Canola	mitochondrion	80.0	80.0
KRH44639	Soybean	mitochondrion	71.43	75.76
CDY32413	Canola	plastid	75.71	75.71
CDY43919	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	75.71	75.71
CDX87828	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	75.71	75.71
CDX82211	Canola	plastid	75.71	75.71
KRH47013	Soybean	mitochondrion	75.71	75.71
GSMUA_Achr2P05010_001	Banana	cytosol	60.0	75.0
Bra030431.1-P	Field mustard	cytosol	60.0	75.0
VIT_10s0092g00280.t01	Wine grape	mitochondrion	55.71	72.22
CDY27534	Canola	mitochondrion, plastid	71.43	71.43
CDY37308	Canola	mitochondrion, plastid	74.29	71.23
EES01052	Sorghum	mitochondrion	68.57	69.57
Zm00001d044441_P002	Maize	mitochondrion	68.57	68.57
Os08t0250200-01	Rice	mitochondrion	67.14	68.12
Bra023896.1-P	Field mustard	mitochondrion	70.0	68.06
VIT_09s0018g01930.t01	Wine grape	mitochondrion, plastid	68.57	66.67
TraesCS3A01G291800.1	Wheat	mitochondrion	58.57	65.08
GSMUA_Achr9P19600_001	Banana	mitochondrion	65.71	64.79
CDY02587	Canola	endoplasmic reticulum, extracellular	67.14	64.38
TraesCS5A01G017000.1	Wheat	mitochondrion	62.86	63.77
TraesCS5B01G015000.1	Wheat	mitochondrion	62.86	63.77
TraesCS3B01G326400.1	Wheat	plastid	57.14	63.49
VIT_19s0014g04520.t01	Wine grape	cytosol	44.29	63.27
Zm00001d011314_P001	Maize	mitochondrion	65.71	63.01
TraesCS3D01G291500.1	Wheat	mitochondrion	61.43	62.32
HORVU1Hr1G030420.1	Barley	mitochondrion	55.71	61.9
HORVU5Hr1G004830.5	Barley	mitochondrion	57.14	46.51
VIT_18s0089g00420.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	48.57	45.33
GSMUA_Achr1P15900_001	Banana	plastid	62.86	34.11
CDX98292	Canola	cytosol	60.0	25.45

Protein Annotations

Gene3D:1.10.1620.20	EntrezGene:102578499	MapMan:2.4.6.2.6	InterPro:ATP_synth_F1_esu_mt	InterPro:ATP_synth_F1_esu_sf_mt	GO:GO:0000275
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015986	GO:GO:0016020	GO:GO:0016787	GO:GO:0046933
GO:GO:0099132	InterPro:IPR036742	UniProt:M1AIX7	PFAM:PF04627	EnsemblPlantsGene:PGSC0003DMG402009187	PGSC:PGSC0003DMG402009187
EnsemblPlants:PGSC0003DMT400023749	PANTHER:PTHR12448	PANTHER:PTHR12448:SF0	SUPFAM:SSF48690	UniParc:UPI000295FBC0	RefSeq:XP_006342867.1

Description

ATP synthase epsilon chain, mitochondrial [Source:PGSC_GENE;Acc:PGSC0003DMG402009187]

Coordinates

chr3:-:61874440..61877334

Molecular Weight (calculated)

7924.4 Da

IEP (calculated)

9.173

GRAVY (calculated)

-0.690

Length

70 amino acids

Sequence
(BLAST)

1: MASNAAAPFW RSAGMTYITY SNLCANLVRN CLKEPYKSEA LTREKVHYTI SKWADGKPQK PTIRSDTPED

Best Arabidopsis Sequence Match ( AT1G51650.1 )
(BLAST)

1: MASNAAVPFW RAAGMTYISY SNICANIVRN CLKEPHKAEA LTREKVHFSL SKWADGKPQK PVLRSDTPEV

Arabidopsis Description

ATP synthase subunit epsilon, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q96253]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.