Factsheet for Solyc06g063220.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023749	Potato	mitochondrion, plastid	94.29	94.29
PGSC0003DMT400068159	Potato	mitochondrion	92.86	92.86
Solyc12g055760.1.1	Tomato	plastid	91.43	91.43
Bra014294.1-P	Field mustard	mitochondrion	81.43	81.43
CDY46549	Canola	mitochondrion	81.43	81.43
GSMUA_Achr2P05010_001	Banana	cytosol	64.29	80.36
AT1G51650.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	80.0	80.0
CDX82211	Canola	plastid	78.57	78.57
CDY32413	Canola	plastid	78.57	78.57
KRH44639	Soybean	mitochondrion	72.86	77.27
KRH47013	Soybean	mitochondrion	77.14	77.14
CDX87828	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	75.71	75.71
CDY43919	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	75.71	75.71
Bra030431.1-P	Field mustard	cytosol	60.0	75.0
Zm00001d044441_P002	Maize	mitochondrion	72.86	72.86
CDY27534	Canola	mitochondrion, plastid	72.86	72.86
CDY37308	Canola	mitochondrion, plastid	75.71	72.6
EES01052	Sorghum	mitochondrion	71.43	72.46
VIT_10s0092g00280.t01	Wine grape	mitochondrion	55.71	72.22
Os08t0250200-01	Rice	mitochondrion	70.0	71.01
Bra023896.1-P	Field mustard	mitochondrion	71.43	69.44
GSMUA_Achr9P19600_001	Banana	mitochondrion	70.0	69.01
TraesCS3A01G291800.1	Wheat	mitochondrion	61.43	68.25
TraesCS3B01G326400.1	Wheat	plastid	60.0	66.67
VIT_09s0018g01930.t01	Wine grape	mitochondrion, plastid	68.57	66.67
CDY02587	Canola	endoplasmic reticulum, extracellular	68.57	65.75
Zm00001d011314_P001	Maize	mitochondrion	68.57	65.75
TraesCS3D01G291500.1	Wheat	mitochondrion	64.29	65.22
TraesCS5A01G017000.1	Wheat	mitochondrion	61.43	62.32
TraesCS5B01G015000.1	Wheat	mitochondrion	61.43	62.32
VIT_19s0014g04520.t01	Wine grape	cytosol	42.86	61.22
HORVU1Hr1G030420.1	Barley	mitochondrion	54.29	60.32
HORVU5Hr1G004830.5	Barley	mitochondrion	58.57	47.67
VIT_18s0089g00420.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	48.57	45.33
GSMUA_Achr1P15900_001	Banana	plastid	64.29	34.88
CDX98292	Canola	cytosol	62.86	26.67

Protein Annotations

Gene3D:1.10.1620.20	MapMan:2.4.6.2.6	InterPro:ATP_synth_F1_esu_mt	InterPro:ATP_synth_F1_esu_sf_mt	GO:GO:0000275	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005743	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015986	GO:GO:0016020	GO:GO:0016787	GO:GO:0016887
GO:GO:0046933	GO:GO:0099132	InterPro:IPR036742	UniProt:K4C753	PFAM:PF04627	PANTHER:PTHR12448
PANTHER:PTHR12448:SF0	SUPFAM:SSF48690	EnsemblPlantsGene:Solyc06g063220.2	EnsemblPlants:Solyc06g063220.2.1	UniParc:UPI0002766D10	:

Description

No Description!

Coordinates

chr6:-:39930962..39932774

Molecular Weight (calculated)

7894.3 Da

IEP (calculated)

9.225

GRAVY (calculated)

-0.634

Length

70 amino acids

Sequence
(BLAST)

1: MASNAAAPFW RSAGMTYITY SNLCANLVRN CLKEPYKSEA LSREKVHFTI SKWADGKPQK PTIRSDSPEE

Best Arabidopsis Sequence Match ( AT1G51650.1 )
(BLAST)

1: MASNAAVPFW RAAGMTYISY SNICANIVRN CLKEPHKAEA LTREKVHFSL SKWADGKPQK PVLRSDTPEV

Arabidopsis Description

ATP synthase subunit epsilon, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q96253]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.