Factsheet for PGSC0003DMT400068159

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g063220.2.1	Tomato	plastid	92.86	92.86
PGSC0003DMT400023749	Potato	mitochondrion, plastid	91.43	91.43
PGSC0003DMT400074206	Potato	mitochondrion, plastid	90.0	90.0
Bra014294.1-P	Field mustard	mitochondrion	77.14	77.14
AT1G51650.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	77.14	77.14
CDY46549	Canola	mitochondrion	77.14	77.14
CDX82211	Canola	plastid	74.29	74.29
CDY32413	Canola	plastid	74.29	74.29
KRH44639	Soybean	mitochondrion	68.57	72.73
CDX87828	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	71.43	71.43
KRH47013	Soybean	mitochondrion	71.43	71.43
CDY43919	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	71.43	71.43
GSMUA_Achr2P05010_001	Banana	cytosol	57.14	71.43
Bra030431.1-P	Field mustard	cytosol	55.71	69.64
EES01052	Sorghum	mitochondrion	68.57	69.57
Zm00001d044441_P002	Maize	mitochondrion	68.57	68.57
CDY27534	Canola	mitochondrion, plastid	68.57	68.57
VIT_10s0092g00280.t01	Wine grape	mitochondrion	52.86	68.52
CDY37308	Canola	mitochondrion, plastid	71.43	68.49
Os08t0250200-01	Rice	mitochondrion	67.14	68.12
Bra023896.1-P	Field mustard	mitochondrion	67.14	65.28
TraesCS3A01G291800.1	Wheat	mitochondrion	58.57	65.08
VIT_09s0018g01930.t01	Wine grape	mitochondrion, plastid	65.71	63.89
TraesCS3B01G326400.1	Wheat	plastid	57.14	63.49
CDY02587	Canola	endoplasmic reticulum, extracellular	65.71	63.01
TraesCS3D01G291500.1	Wheat	mitochondrion	61.43	62.32
GSMUA_Achr9P19600_001	Banana	mitochondrion	62.86	61.97
Zm00001d011314_P001	Maize	mitochondrion	64.29	61.64
TraesCS5A01G017000.1	Wheat	mitochondrion	60.0	60.87
TraesCS5B01G015000.1	Wheat	mitochondrion	60.0	60.87
HORVU1Hr1G030420.1	Barley	mitochondrion	54.29	60.32
VIT_19s0014g04520.t01	Wine grape	cytosol	41.43	59.18
HORVU5Hr1G004830.5	Barley	mitochondrion	55.71	45.35
VIT_18s0089g00420.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	45.71	42.67
GSMUA_Achr1P15900_001	Banana	plastid	60.0	32.56
CDX98292	Canola	cytosol	58.57	24.85

Protein Annotations

Gene3D:1.10.1620.20	MapMan:2.4.6.2.6	InterPro:ATP_synth_F1_esu_mt	InterPro:ATP_synth_F1_esu_sf_mt	GO:GO:0000275	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015986	GO:GO:0016020	GO:GO:0016787	GO:GO:0046933	GO:GO:0099132
InterPro:IPR036742	UniProt:M1CIJ0	PFAM:PF04627	EnsemblPlantsGene:PGSC0003DMG400026508	PGSC:PGSC0003DMG400026508	EnsemblPlants:PGSC0003DMT400068159
PANTHER:PTHR12448	PANTHER:PTHR12448:SF0	SUPFAM:SSF48690	UniParc:UPI000295509C	:	:

Description

ATP synthase epsilon subunit 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400026508]

Coordinates

chr6:+:48146660..48148791

Molecular Weight (calculated)

7958.4 Da

IEP (calculated)

9.173

GRAVY (calculated)

-0.716

Length

70 amino acids

Sequence
(BLAST)

1: MASNAAAPFW RSAGMTYIAY SNLCTNLVRN CLKEPYKSEA LSREKVHYTI SKWADGKPQK PTTRSDFPEE

Best Arabidopsis Sequence Match ( AT1G51650.1 )
(BLAST)

1: MASNAAVPFW RAAGMTYISY SNICANIVRN CLKEPHKAEA LTREKVHFSL SKWADGKPQK PVLRSDTPEV

Arabidopsis Description

ATP synthase subunit epsilon, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q96253]
SUBAcon: [extracellular,cytosol,golgi,plasma membrane,vacuole,endoplasmic reticulum,mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.