Factsheet for TraesCS3B01G326400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 22160430
golgi: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G291800.1	Wheat	mitochondrion	98.41	98.41
TraesCS3D01G291500.1	Wheat	mitochondrion	96.83	88.41
Zm00001d044441_P002	Maize	mitochondrion	82.54	74.29
EES01052	Sorghum	mitochondrion	80.95	73.91
Zm00001d011314_P001	Maize	mitochondrion	84.13	72.6
Os08t0250200-01	Rice	mitochondrion	79.37	72.46
CDX82211	Canola	plastid	76.19	68.57
CDY32413	Canola	plastid	76.19	68.57
VIT_10s0092g00280.t01	Wine grape	mitochondrion	57.14	66.67
KRH44639	Soybean	mitochondrion	68.25	65.15
CDY43919	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	71.43	64.29
Bra014294.1-P	Field mustard	mitochondrion	71.43	64.29
CDY46549	Canola	mitochondrion	71.43	64.29
Bra023896.1-P	Field mustard	mitochondrion	73.02	63.89
TraesCS5B01G015000.1	Wheat	mitochondrion	69.84	63.77
CDY37308	Canola	mitochondrion, plastid	73.02	63.01
CDY27534	Canola	mitochondrion, plastid	69.84	62.86
CDX87828	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	69.84	62.86
AT1G51650.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	69.84	62.86
CDY02587	Canola	endoplasmic reticulum, extracellular	71.43	61.64
PGSC0003DMT400074206	Potato	mitochondrion, plastid	66.67	60.0
Solyc06g063220.2.1	Tomato	plastid	66.67	60.0
GSMUA_Achr9P19600_001	Banana	mitochondrion	66.67	59.15
Bra030431.1-P	Field mustard	cytosol	52.38	58.93
GSMUA_Achr2P05010_001	Banana	cytosol	52.38	58.93
KRH47013	Soybean	mitochondrion	65.08	58.57
Solyc12g055760.1.1	Tomato	plastid	65.08	58.57
PGSC0003DMT400023749	Potato	mitochondrion, plastid	63.49	57.14
PGSC0003DMT400068159	Potato	mitochondrion	63.49	57.14
VIT_09s0018g01930.t01	Wine grape	mitochondrion, plastid	65.08	56.94
VIT_19s0014g04520.t01	Wine grape	cytosol	39.68	51.02
VIT_18s0089g00420.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	47.62	40.0
GSMUA_Achr1P15900_001	Banana	plastid	69.84	34.11
CDX98292	Canola	cytosol	66.67	25.45

Protein Annotations

Gene3D:1.10.1620.20	MapMan:2.4.6.2.6	InterPro:ATP_synth_F1_esu_mt	InterPro:ATP_synth_F1_esu_sf_mt	GO:GO:0000275	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015986	GO:GO:0016020	GO:GO:0016787	GO:GO:0046933	InterPro:IPR036742
PFAM:PF04627	PANTHER:PTHR12448	PANTHER:PTHR12448:SF0	SUPFAM:SSF48690	EnsemblPlantsGene:TraesCS3B01G326400	EnsemblPlants:TraesCS3B01G326400.1
TIGR:cd12153	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:+:527233232..527233572

Molecular Weight (calculated)

7087.5 Da

IEP (calculated)

9.774

GRAVY (calculated)

-0.297

Length

63 amino acids

Sequence
(BLAST)

1: MSAMTAAVPF WRAAGMTYIG YSNVCAALVR SCLKEPFKTE VSSREKVHFS LSKWTDEKQQ KPS

Best Arabidopsis Sequence Match ( AT1G51650.1 )
(BLAST)

1: MASNAAVPFW RAAGMTYISY SNICANIVRN CLKEPHKAEA LTREKVHFSL SKWADGKPQK PVLRSDTPEV

Arabidopsis Description

ATP synthase subunit epsilon, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q96253]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.