Factsheet for Bra036488.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol, plasma membrane

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2
extracellular 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001050.1-P
Bra001152.1-P
Bra002279.1-P
Bra002662.1-P
Bra005560.1-P
Bra006369.1-P
Bra006529.1-P
Bra006530.1-P
Bra006775.1-P
Bra009693.1-P
Bra010342.1-P
Bra010849.1-P
Bra011079.1-P
Bra013838.1-P
Bra017408.1-P
Bra018036.1-P
Bra020079.1-P
Bra020378.1-P
Bra021810.1-P
Bra022899.1-P
Bra023896.1-P
Bra024165.1-P
Bra025066.1-P
Bra026274.1-P
Bra026492.1-P
Bra027705.1-P
Bra029375.1-P
Bra029917.1-P
Bra030922.1-P
Bra032291.1-P
Bra032422.1-P
Bra035381.1-P
Bra038453.1-P
Bra039431.1-P
Bra039688.1-P
Bra040214.1-P
Bra040569.1-P
Bra040576.1-P
Bra040915.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20580.1	Bra010849.1-P	AT1G29150.1	20706207
AT2G20580.1	Bra032291.1-P	AT1G29150.1	20706207
AT2G20580.1	Bra023896.1-P	AT1G51650.1	20706207
AT2G20580.1	Bra030922.1-P	AT1G53750.1	20706207
AT2G20580.1	Bra039688.1-P	AT1G53750.1	20706207
AT2G20580.1	Bra040569.1-P	AT1G53750.1	20706207
AT2G20580.1	Bra027705.1-P	AT1G64520.1	20706207
AT2G20580.1	Bra040915.1-P	AT1G64520.1	20706207
AT2G20580.1	Bra010342.1-P	AT2G20140.1	20706207
AT2G20580.1	Bra011079.1-P	AT2G20140.1	20706207
AT2G20580.1	Bra024165.1-P	AT2G20140.1	20706207
AT2G20580.1	Bra005560.1-P	AT2G32730.1	20706207
AT2G20580.1	Bra021810.1-P	AT2G32730.1	20706207
AT2G20580.1	Bra022899.1-P	AT2G32730.1	20706207
AT2G20580.1	Bra001050.1-P	AT3G02540.1	21798944
AT2G20580.1	Bra001152.1-P	AT3G05530.1	20706207
AT2G20580.1	Bra039431.1-P	AT3G05530.1	20706207
AT2G20580.1	Bra040214.1-P	AT3G05530.1	20706207
AT2G20580.1	Bra006369.1-P	AT3G11270.1	20706207
AT2G20580.1	Bra017408.1-P	AT3G11270.1	20706207
AT2G20580.1	Bra032422.1-P	AT3G11270.1	20706207
AT2G20580.1	Bra018036.1-P	AT3G48750.1	20706207
AT2G20580.1	Bra029917.1-P	AT3G48750.1	20706207
AT2G20580.1	Bra038453.1-P	AT4G16390.1	20706207
AT2G20580.1	Bra040576.1-P	AT4G16390.1	20706207
AT2G20580.1	Bra013838.1-P	AT4G24820.1	20706207
AT2G20580.1	Bra026274.1-P	AT4G28230.1	20706207
AT2G20580.1	Bra006369.1-P	AT5G05780.1	20706207
AT2G20580.1	Bra017408.1-P	AT5G05780.1	20706207
AT2G20580.1	Bra032422.1-P	AT5G05780.1	20706207
AT2G20580.1	Bra002279.1-P	AT5G20000.1	20706207
AT2G20580.1	Bra006529.1-P	AT5G20000.1	20706207
AT2G20580.1	Bra006530.1-P	AT5G20000.1	20706207
AT2G20580.1	Bra020079.1-P	AT5G20000.1	20706207
AT2G20580.1	Bra009693.1-P	AT5G23540.1	20706207
AT2G20580.1	Bra026492.1-P	AT5G23540.1	20706207
AT2G20580.1	Bra029375.1-P	AT5G23540.1	20706207
AT2G20580.1	Bra035381.1-P	AT5G35750.1	18642946
AT2G20580.1	Bra025066.1-P	AT5G45620.1	20706207
AT2G20580.1	Bra002662.1-P	AT5G58290.1	20706207
AT2G20580.1	Bra006775.1-P	AT5G58290.1	20706207
AT2G20580.1	Bra020378.1-P	AT5G58290.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31952	Canola	plasma membrane	95.8	93.22
AT2G20580.1	Thale cress	cytosol	90.28	84.4
Bra024200.1-P	Field mustard	cytosol	87.15	81.48
Bra011030.1-P	Field mustard	cytosol	86.07	80.47
VIT_12s0028g03130.t01	Wine grape	cytosol	80.31	75.17
Solyc07g053650.2.1	Tomato	nucleus	73.11	74.09
Bra010366.1-P	Field mustard	cytosol	77.91	73.25
PGSC0003DMT400024306	Potato	cytosol	78.27	72.77
GSMUA_Achr11P...	Banana	cytosol	71.55	67.12
TraesCS6D01G105500.1	Wheat	golgi	71.07	66.15
TraesCS6A01G116500.1	Wheat	golgi, unclear	71.07	66.15
Os02t0146700-02	Rice	plasma membrane	71.07	65.92
HORVU6Hr1G021020.1	Barley	cytosol	70.95	65.81
TraesCS6B01G144500.1	Wheat	cytosol	70.95	65.38
Zm00001d053881_P001	Maize	mitochondrion, plastid	69.87	65.25
EES04513	Sorghum	cytosol	69.87	65.1
Zm00001d015259_P001	Maize	cytosol	69.39	64.94
Solyc10g008180.1.1	Tomato	plastid	56.3	64.16
Os09t0326800-01	Rice	plasma membrane	68.43	63.97
Os06t0699900-01	Rice	plasma membrane	68.91	63.71
KRH57774	Soybean	endoplasmic reticulum, plasma membrane	20.53	58.56
TraesCS7B01G322000.1	Wheat	cytosol	58.1	55.0
TraesCS7D01G413900.1	Wheat	mitochondrion	54.5	54.63
TraesCS7B01G321900.1	Wheat	cytosol	56.78	54.56
TraesCS7A01G421700.1	Wheat	cytosol	57.5	54.43
TraesCS7A01G421600.1	Wheat	mitochondrion	53.3	54.35
TraesCS7D01G413800.1	Wheat	cytosol	39.62	53.23
HORVU7Hr1G097500.16	Barley	endoplasmic reticulum, golgi, plasma membrane	30.61	43.52
GSMUA_Achr1P10580_001	Banana	cytosol, nucleus, plasma membrane	3.12	17.93
Bra003811.1-P	Field mustard	endoplasmic reticulum	4.8	16.26
Bra016824.1-P	Field mustard	plastid, vacuole	5.88	14.2
Bra005560.1-P	Field mustard	plastid	15.97	13.19
Bra022899.1-P	Field mustard	cytosol, plastid	15.73	13.05
Bra021810.1-P	Field mustard	cytosol, plastid	15.73	13.05

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.6.2.2.1	InterPro:26S_Psome_Rpn1	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra036488
EnsemblPlants:Bra036488.1	EnsemblPlants:Bra036488.1-P	GO:GO:0000502	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0005886	GO:GO:0006950	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0008540
GO:GO:0009056	GO:GO:0009506	GO:GO:0009719	GO:GO:0009751	GO:GO:0009987	GO:GO:0016020
GO:GO:0019538	GO:GO:0030163	GO:GO:0030234	GO:GO:0042176	GO:GO:0043130	GO:GO:0045087
GO:GO:0050790	GO:GO:0051726	InterPro:IPR011989	UniProt:M4F5X9	PIRSF:PIRSF015965	PANTHER:PTHR10943
PANTHER:PTHR10943:SF8	SUPFAM:SSF48371	SignalP:SignalP-noTM	UniParc:UPI0002540E5C	SEG:seg	:

Description

AT2G20580 (E=4e-164) RPN1A, ATRPN1A | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A); binding / enzyme regulator

Coordinates

chrA07:-:122213..128049

Molecular Weight (calculated)

91771.8 Da

IEP (calculated)

4.822

GRAVY (calculated)

-0.079

Length

833 amino acids

Sequence
(BLAST)

001: MRLLLLASHF TPTYLAPTPD TNSVGGGGAR KDEASVKVPS KDPKKKDDKK EDDLSEEDLE LKQNLELYVE RVQDPNPDLQ RAALKSMRQE IRASTSSMTS
101: VPKPLKFLRP HYGTLKAFHQ TMPASDLKKC LSDILSVLAL TMSAEGQRES LSYRLIGTEG DIGSWGHEYT EEAPIDDLME LVQQIVAFHM KHNAETEAVD
201: LLMDVEDLDL LLEHVDKTNF KRTCNYLTSA AKYLPGPDDM LVLDISYMIY MKFEEYPNAL QIALFLDNTQ YVKQVFTSCA DLLRKKQFCY MIARHGITFE
301: LDDEMVADED DREALQDIVN NTKLSEGYLT LARDIEVMEA KTPEDIYKAH LLDGRASSGA SVDSARQNLA ATFVKAFVNA GFGQDKLMTV PSDSTTRSSG
401: NWLFKNKEHG KISAAASLGM IQLWDVEGGL AQLDKYFHSN DNPILSGALL GVRIVNCGIK SDCDPALALL GDYVDKEDSS VRIGAIMGLG IAYAAPLDVI
501: AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIKKYCDMTL LSCAYAGTGN VLKVQDLLAQ
601: CGEHLEKGDI HQGPAVLGLA MVAMSEELGI DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRPSHDTD SEVAMVRIAQ GLVHMGKGLL
701: TLTPFHSERF LLSPTALAGI VTLLHACLNM KPIILGKYHY VLYFLVLAMQ PRMMLTVDKD LKPLSVPVRV GQAVDVVGQA GRPKTITGFQ THSTPVLLAA
801: GERAELATDK YIPLSPILEG FIILEENADY REE

Best Arabidopsis Sequence Match ( AT2G20580.1 )
(BLAST)

001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E

Arabidopsis Description

RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.