Factsheet for Bra038453.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32239	Canola	plastid	98.42	98.0
Bra040576.1-P	Field mustard	plastid	87.95	88.71
AT4G16390.1	Thale cress	plastid	86.08	85.47
VIT_00s0194g00310.t01	Wine grape	cytosol, extracellular	21.81	68.78
VIT_00s0194g00270.t01	Wine grape	plastid	68.58	68.19
Solyc09g042290.1.1	Tomato	cytosol	38.45	65.69
PGSC0003DMT400034773	Potato	plastid	61.98	62.7
KRH51188	Soybean	nucleus	61.55	62.63
Solyc11g012670.1.1	Tomato	nucleus	61.84	62.55
KRH01964	Soybean	nucleus	60.98	59.69
GSMUA_Achr7P26730_001	Banana	plastid	44.76	54.93
KRH36594	Soybean	plastid	54.95	54.33
KRH36593	Soybean	plastid	53.37	53.68
HORVU2Hr1G122510.2	Barley	cytosol	28.55	52.23
KRH11577	Soybean	plastid	51.65	52.1
KRH36591	Soybean	plastid	50.79	51.16
Os03t0215900-00	Rice	plastid	48.78	50.3
TraesCS4D01G244400.1	Wheat	plastid	48.35	48.98
Zm00001d028221_P001	Maize	plastid	48.35	48.77
EER92639	Sorghum	plastid	48.21	48.63
TraesCS4B01G245000.1	Wheat	plastid	47.78	48.33
TraesCS4A01G079200.1	Wheat	plastid	47.63	48.26
HORVU4Hr1G067600.1	Barley	nucleus	45.62	45.49
Zm00001d025264_P001	Maize	mitochondrion, peroxisome	20.23	38.52
KRH11579	Soybean	plastid	50.07	34.35
Bra025013.1-P	Field mustard	plastid	34.29	33.61
KRH36592	Soybean	plastid	47.92	32.62
KRH11578	Soybean	plastid	48.21	32.56
Bra003787.1-P	Field mustard	cytosol	15.49	21.95
Bra016533.1-P	Field mustard	plastid	19.23	17.38
Bra015895.1-P	Field mustard	mitochondrion	18.22	17.21
Bra003609.1-P	Field mustard	mitochondrion, plastid	17.79	15.03
Bra025697.1-P	Field mustard	plastid	17.5	14.59

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra038453	EnsemblPlants:Bra038453.1	EnsemblPlants:Bra038453.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4FBI7
PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFAM:PF17177	InterPro:PPR_long	PFscan:PS50828
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF437	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF81901
InterPro:Smr_dom	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00025446E5	SEG:seg	:

Description

AT4G16390 (E=0.0) | LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G46580.1); Has 19821 Blast hits to 5782 proteins in 183 species: Archae - 2; Bacteria - 24; Metazoa - 276; Fungi - 350; Plants - 18437; Viruses - 0; Other Eukaryotes - 732 (source: NCBI BLink).

Coordinates

chrA01:-:11109068..11111161

Molecular Weight (calculated)

78018.4 Da

IEP (calculated)

6.180

GRAVY (calculated)

-0.270

Length

697 amino acids

Sequence
(BLAST)

001: MSFHLSSSPS SLLHDPHPLC NLLSTHPKTT PRSFFSSYNP NFHSRNLLQT SHVSLQESLP HETQIEKPKL DANPPGSAPK RYAWVNPNSP RASQLRRKSY
101: DSRYASLIKL AESLDACPPT EADVSDELTK FGSKLFEQDA VVTLNNMTNP ETAPLVLNNL LETLKPTREV ILYNVTMKVF RKSKDLEKSE KLFDEMLQRG
201: VKPDNATFTT LISCARQCGL PKRAVEWFEK MPSFGCEPDN VTLATMIDAY GRAGNVEMAL SLYDRARTEK WRIDPVTFST LIRIYGYSGN YDGCLNIYEE
301: MKSLGVKPNL VIYNRLLDSM GKAKRPWQAT IIHKDLISNG FEPNWSTYAA LIRAYGRARY GDDALVIYRQ MKGKGMELTV ILYNTLLSMC ADIGYVDEAF
401: EIFQDMKSSG SCDPDSWTFS SLVTVYSCCG RVSEAEAALR EMREAGFEPT LFVLTSLIQC YGKAKQVDDV VRTFEQVLEL GIEPDDRFCG CLLNVMTQTP
501: KEEIGKLIGC VEKAKPKLGR VVKMLVEEEN CEEGVFKKEA SELIDSIGSD VNKAYLNCLI DLCVNLNKLE KACEILQLGL EYDIYSGLQS KSATQWSLHL
601: KSLSLGAALT ALHVWMNDLS EAFLTSGEEF PQLLGINTGH GKHKYSDKGL AAVFESHLKE LNAPFHEAPD KVGWFLTTSV AAKAWLESRR LSGEVSA

Best Arabidopsis Sequence Match ( AT4G16390.1 )
(BLAST)

001: MSFHHLCSSP SSLLHDPLPL CNLLSVYPKS TPRSFLSSYN PNSSHFHSRN LLQATHVSVQ EAIPQSEKSK LVDVDLPIPE PTASKSYVWV NPKSPRASQL
101: RRKSYDSRYS SLIKLAESLD ACKPNEADVC DVITGFGGKL FEQDAVVTLN NMTNPETAPL VLNNLLETMK PSREVILYNV TMKVFRKSKD LEKSEKLFDE
201: MLERGIKPDN ATFTTIISCA RQNGVPKRAV EWFEKMSSFG CEPDNVTMAA MIDAYGRAGN VDMALSLYDR ARTEKWRIDA VTFSTLIRIY GVSGNYDGCL
301: NIYEEMKALG VKPNLVIYNR LIDSMGRAKR PWQAKIIYKD LITNGFTPNW STYAALVRAY GRARYGDDAL AIYREMKEKG LSLTVILYNT LLSMCADNRY
401: VDEAFEIFQD MKNCETCDPD SWTFSSLITV YACSGRVSEA EAALLQMREA GFEPTLFVLT SVIQCYGKAK QVDDVVRTFD QVLELGITPD DRFCGCLLNV
501: MTQTPSEEIG KLIGCVEKAK PKLGQVVKML VEEQNCEEGV FKKEASELID SIGSDVKKAY LNCLIDLCVN LNKLERACEI LQLGLEYDIY TGLQSKSATQ
601: WSLHLKSLSL GAALTALHVW MNDLSEAALE SGEEFPPLLG INTGHGKHKY SDKGLAAVFE SHLKELNAPF HEAPDKVGWF LTTSVAAKAW LESRRSAGGV
701: SA

Arabidopsis Description

P67Pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.