Factsheet for Bra040576.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22765	Canola	cytosol	76.12	95.46
CDY42535	Canola	cytosol	75.11	94.19
Bra038453.1-P	Field mustard	plastid	88.71	87.95
AT4G16390.1	Thale cress	plastid	84.8	83.48
VIT_00s0194g00270.t01	Wine grape	plastid	67.58	66.62
VIT_00s0194g00310.t01	Wine grape	cytosol, extracellular	21.27	66.52
Solyc09g042290.1.1	Tomato	cytosol	38.35	64.95
KRH51188	Soybean	nucleus	61.51	62.04
PGSC0003DMT400034773	Potato	plastid	61.65	61.83
Solyc11g012670.1.1	Tomato	nucleus	61.51	61.68
KRH01964	Soybean	nucleus	61.36	59.55
GSMUA_Achr7P26730_001	Banana	plastid	44.43	54.05
KRH36593	Soybean	plastid	54.12	53.97
KRH36594	Soybean	plastid	54.85	53.76
KRH11577	Soybean	plastid	51.81	51.81
KRH36591	Soybean	plastid	50.94	50.87
HORVU2Hr1G122510.2	Barley	cytosol	27.79	50.39
Os03t0215900-00	Rice	plastid	48.05	49.11
EER92639	Sorghum	plastid	48.48	48.48
TraesCS4D01G244400.1	Wheat	plastid	48.19	48.4
Zm00001d028221_P001	Maize	plastid	48.05	48.05
TraesCS4A01G079200.1	Wheat	plastid	47.03	47.24
TraesCS4B01G245000.1	Wheat	plastid	47.03	47.17
HORVU4Hr1G067600.1	Barley	nucleus	45.88	45.35
Zm00001d025264_P001	Maize	mitochondrion, peroxisome	20.69	39.07
KRH11579	Soybean	plastid	49.35	33.56
Bra025013.1-P	Field mustard	plastid	33.57	32.63
KRH11578	Soybean	plastid	47.61	31.88
KRH36592	Soybean	plastid	47.18	31.84
Bra003787.1-P	Field mustard	cytosol	15.63	21.95
Bra015895.1-P	Field mustard	mitochondrion	18.09	16.94
Bra016533.1-P	Field mustard	plastid	18.52	16.6
Bra003609.1-P	Field mustard	mitochondrion, plastid	18.38	15.39
Bra025697.1-P	Field mustard	plastid	17.37	14.35

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra040576	EnsemblPlants:Bra040576.1	EnsemblPlants:Bra040576.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4FHJ8
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFAM:PF17177	InterPro:PPR_long
PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF437	InterPro:Pentatricopeptide_repeat	SMART:SM00463
SUPFAM:SSF81901	InterPro:Smr_dom	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000253E6D0	SEG:seg

Description

AT4G16390 (E=0.0) | LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G46580.1); Has 19821 Blast hits to 5782 proteins in 183 species: Archae - 2; Bacteria - 24; Metazoa - 276; Fungi - 350; Plants - 18437; Viruses - 0; Other Eukaryotes - 732 (source: NCBI BLink).

Coordinates

chrScaffold000219:+:42988..45063

Molecular Weight (calculated)

77159.7 Da

IEP (calculated)

6.179

GRAVY (calculated)

-0.193

Length

691 amino acids

Sequence
(BLAST)

001: MSFHLCSSPS SLLHDPNLFS VHPKPTPRTI FSSYNPNSPP FHSRNLLQTI HVSIQEAIPQ ETHIEKPKLD AASKRNAWVN PKSPRASQLR RNSYDSRYSS
101: LVKLAESLDA CAPNEADVSD VITKFGSNLF EQDAVVTLNN MTNPETAPLV LINLLETVKP SREVILYNVT MKVLRKSKDF DKAEKLFDEM LQRGVKPDNA
201: TFTTLISCAR QCGLPKRAVE WFEKMPSFGC EPDNVTLAAM IDAYGRAGNV EMALSLYDRA RTEKWRIDAV TFSTLIRIYG YSGNYDGCLN IYEEMKSLGV
301: KPNLVIYNRL LDSMGKAKRP WQAKIIHKDL ISNGFEPNWS TYAALVRAYG RARYGDDALV IYREMKEKGL ELTVILYNTL LSMCADIGYV DEAFEIFQDM
401: KSCGTCEPDR WTFSSLITVY SCCGRVAEAE AALLEMREAG FEPTLFVLTS VIQCYGKAKQ VDDVVRTFDQ VLELGIEPDD RFCGCLLNVM TQTPREEIGK
501: LIECVAKAKP KLGHVVKMLV QDESCEEGVL KKEASELIDS IGSDVKKAYL NCLIDLCVKL NKLEKACEIL QLGMECDIYS SLQSKSATQW SLHLKSLSLG
601: AALTALHVWM NDLTEAALAS GEEFPPLLGI NTGHGKHKYS DKGLAAVVES HLKELNAPFH EAPDKVGWFL TTSVAAKEWL ESRRLSGEVS A

Best Arabidopsis Sequence Match ( AT4G16390.1 )
(BLAST)

001: MSFHHLCSSP SSLLHDPLPL CNLLSVYPKS TPRSFLSSYN PNSSHFHSRN LLQATHVSVQ EAIPQSEKSK LVDVDLPIPE PTASKSYVWV NPKSPRASQL
101: RRKSYDSRYS SLIKLAESLD ACKPNEADVC DVITGFGGKL FEQDAVVTLN NMTNPETAPL VLNNLLETMK PSREVILYNV TMKVFRKSKD LEKSEKLFDE
201: MLERGIKPDN ATFTTIISCA RQNGVPKRAV EWFEKMSSFG CEPDNVTMAA MIDAYGRAGN VDMALSLYDR ARTEKWRIDA VTFSTLIRIY GVSGNYDGCL
301: NIYEEMKALG VKPNLVIYNR LIDSMGRAKR PWQAKIIYKD LITNGFTPNW STYAALVRAY GRARYGDDAL AIYREMKEKG LSLTVILYNT LLSMCADNRY
401: VDEAFEIFQD MKNCETCDPD SWTFSSLITV YACSGRVSEA EAALLQMREA GFEPTLFVLT SVIQCYGKAK QVDDVVRTFD QVLELGITPD DRFCGCLLNV
501: MTQTPSEEIG KLIGCVEKAK PKLGQVVKML VEEQNCEEGV FKKEASELID SIGSDVKKAY LNCLIDLCVN LNKLERACEI LQLGLEYDIY TGLQSKSATQ
601: WSLHLKSLSL GAALTALHVW MNDLSEAALE SGEEFPPLLG INTGHGKHKY SDKGLAAVFE SHLKELNAPF HEAPDKVGWF LTTSVAAKAW LESRRSAGGV
701: SA

Arabidopsis Description

P67Pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.