CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22765	Canola	cytosol	97.64	97.64
Bra040576.1-P	Field mustard	plastid	94.19	75.11
CDY32239	Canola	plastid	89.29	70.29
CDY34461	Canola	plastid	88.38	69.57
AT4G16390.1	Thale cress	plastid	87.11	68.38
VIT_00s0194g00310.t01	Wine grape	cytosol, extracellular	26.86	66.97
Solyc09g042290.1.1	Tomato	cytosol	48.46	65.44
VIT_00s0194g00270.t01	Wine grape	plastid	71.32	56.06
KRH51188	Soybean	nucleus	68.6	55.18
PGSC0003DMT400034773	Potato	plastid	68.42	54.72
Solyc11g012670.1.1	Tomato	nucleus	68.24	54.57
KRH01964	Soybean	nucleus	68.06	52.67
HORVU2Hr1G122510.2	Barley	cytosol	34.85	50.39
GSMUA_Achr7P26730_001	Banana	plastid	51.72	50.18
KRH36594	Soybean	plastid	59.71	46.67
Os03t0215900-00	Rice	plastid	56.62	46.15
KRH36593	Soybean	plastid	57.35	45.6
TraesCS4D01G244400.1	Wheat	plastid	56.08	44.91
KRH11577	Soybean	plastid	56.26	44.86
KRH36591	Soybean	plastid	56.08	44.65
TraesCS4B01G245000.1	Wheat	plastid	55.72	44.56
TraesCS4A01G079200.1	Wheat	plastid	55.54	44.48
EER92639	Sorghum	plastid	55.54	44.28
Zm00001d028221_P001	Maize	plastid	55.35	44.14
HORVU4Hr1G067600.1	Barley	nucleus	55.54	43.78
Zm00001d025264_P001	Maize	mitochondrion, peroxisome	24.14	36.34
KRH11579	Soybean	plastid	57.89	31.4
CDY33481	Canola	plastid	39.93	30.94
CDX77673	Canola	plastid	39.56	30.66
KRH11578	Soybean	plastid	55.9	29.84
KRH36592	Soybean	plastid	55.17	29.69
CDX68166	Canola	cytosol	20.33	21.5
CDX85855	Canola	cytosol	19.06	21.34
CDX73110	Canola	cytosol	9.44	17.51
CDY45392	Canola	mitochondrion	20.69	15.45
CDX96689	Canola	plastid	21.05	14.57
CDX83800	Canola	plastid	20.15	14.43
CDX79321	Canola	mitochondrion, plastid	21.05	14.06
CDX67993	Canola	mitochondrion, plastid	20.69	13.9
CDX73109	Canola	plastid	10.16	13.43
CDY19261	Canola	plastid	19.78	13.04
CDY26713	Canola	plastid	19.78	12.69

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078HVQ8	EnsemblPlants:CDY42535	ProteinID:CDY42535	ProteinID:CDY42535.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00074997001	InterPro:IPR002625	InterPro:IPR002885
InterPro:IPR011990	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFAM:PF17177	InterPro:PPR_long
PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF437	InterPro:Pentatricopeptide_repeat	SMART:SM00463
SUPFAM:SSF81901	InterPro:Smr_dom	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EE1D21	SEG:seg

Description

BnaC08g10680DBnaC08g10680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HVQ8]

Coordinates

chrLK032528:-:23406..25229

Molecular Weight (calculated)

61417.0 Da

IEP (calculated)

4.859

GRAVY (calculated)

-0.115

Length

551 amino acids

Sequence
(BLAST)

001: MTNPETAPLV LINLLETVKP SREVILYNVT MKVLRKSKDL EKAEKLFDEM LQRGVKPDNA TFTTLISCAR QCGLPKRAVE WFEKMPSFGC EPDNVTLAAM
101: IDAYGRAGNV ETALSLYDRA RTEKWRIDAV TFSTLIRIYG YSGNYDGCLN IYEEMKSLGV KPNLVIYNRL LDSMGKAKRP WQAKIIHRDL ISNGFEPNWS
201: TYAALVRAYG RARYGDDALV IYREMKEKGL ELTVILYNTL LSMCADIGYV DEAFEIFQDM KSCGTCEPDS WTFSSLITVY SCCGRVAEAE AALLEMREAG
301: FEPTLFVLTS VIQCYGKAKQ VDDVVRTFDQ VLELGIEPDD RFCGCLLNVM TQTPSEEIGK LIECVEKAMP KLGHVVKMLV QDESCEEGVL KKEASELIDS
401: IGSDVKKAYL NCLIDLCVNL SELEKACEIL QLGMECDIYS SLQSKSATQW SLHLKSLSLG AALTALHGWM NDLTETALTS GEEFPPLLGI NTGHGKHKYS
501: DKGLAAVVES HLKELNAPFH EAPDKVGWFL TTSVAAKEWL ESRRSSGEVS A

Best Arabidopsis Sequence Match ( AT4G16390.1 )
(BLAST)

001: MSFHHLCSSP SSLLHDPLPL CNLLSVYPKS TPRSFLSSYN PNSSHFHSRN LLQATHVSVQ EAIPQSEKSK LVDVDLPIPE PTASKSYVWV NPKSPRASQL
101: RRKSYDSRYS SLIKLAESLD ACKPNEADVC DVITGFGGKL FEQDAVVTLN NMTNPETAPL VLNNLLETMK PSREVILYNV TMKVFRKSKD LEKSEKLFDE
201: MLERGIKPDN ATFTTIISCA RQNGVPKRAV EWFEKMSSFG CEPDNVTMAA MIDAYGRAGN VDMALSLYDR ARTEKWRIDA VTFSTLIRIY GVSGNYDGCL
301: NIYEEMKALG VKPNLVIYNR LIDSMGRAKR PWQAKIIYKD LITNGFTPNW STYAALVRAY GRARYGDDAL AIYREMKEKG LSLTVILYNT LLSMCADNRY
401: VDEAFEIFQD MKNCETCDPD SWTFSSLITV YACSGRVSEA EAALLQMREA GFEPTLFVLT SVIQCYGKAK QVDDVVRTFD QVLELGITPD DRFCGCLLNV
501: MTQTPSEEIG KLIGCVEKAK PKLGQVVKML VEEQNCEEGV FKKEASELID SIGSDVKKAY LNCLIDLCVN LNKLERACEI LQLGLEYDIY TGLQSKSATQ
601: WSLHLKSLSL GAALTALHVW MNDLSEAALE SGEEFPPLLG INTGHGKHKY SDKGLAAVFE SHLKELNAPF HEAPDKVGWF LTTSVAAKAW LESRRSAGGV
701: SA

Arabidopsis Description

P67Pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.