CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85855	Canola	cytosol	53.58	83.74
CDX68166	Canola	cytosol	56.31	83.11
CDX73110	Canola	cytosol	31.08	80.47
CDX96689	Canola	plastid	80.49	77.76
HORVU0Hr1G012890.2	Barley	cytosol	39.14	69.52
CDY45392	Canola	mitochondrion	62.03	64.63
CDY19261	Canola	plastid	69.96	64.35
CDY26713	Canola	plastid	68.92	61.7
AT1G18900.3	Thale cress	mitochondrion	67.23	58.35
KRH54492	Soybean	mitochondrion	60.21	52.49
PGSC0003DMT400034282	Potato	mitochondrion	57.87	51.5
KRH63421	Soybean	plastid	59.56	51.0
VIT_17s0000g05510.t01	Wine grape	endoplasmic reticulum	59.43	50.89
KRH56975	Soybean	mitochondrion	56.57	49.66
GSMUA_Achr8P15270_001	Banana	mitochondrion	53.71	49.05
CDX73109	Canola	plastid	26.4	48.68
Solyc03g113380.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	58.26	48.54
EES17501	Sorghum	mitochondrion	53.71	48.42
HORVU5Hr1G000760.8	Barley	mitochondrion	53.84	48.31
TraesCS5D01G012800.1	Wheat	mitochondrion	52.93	47.83
TraesCSU01G073400.1	Wheat	mitochondrion	52.93	47.77
Zm00001d031217_P003	Maize	mitochondrion	52.93	47.71
TraesCS5A01G004000.1	Wheat	mitochondrion	52.67	47.7
Os12t0638900-01	Rice	mitochondrion	52.54	47.03
CDY42535	Canola	cytosol	14.43	20.15
CDY22765	Canola	cytosol	14.43	20.15
CDY33481	Canola	plastid	17.04	18.42
CDY34461	Canola	plastid	16.64	18.29
CDY32239	Canola	plastid	16.64	18.29
CDX77673	Canola	plastid	16.77	18.14
CDX67993	Canola	mitochondrion, plastid	19.25	18.05
CDX79321	Canola	mitochondrion, plastid	18.86	17.58

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlants:CDX83800	ProteinID:CDX83800	ProteinID:CDX83800.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00139550001	InterPro:IPR002625	InterPro:IPR002885
InterPro:IPR011990	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS50828	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF268	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF160443	InterPro:Smr_dom
InterPro:Smr_dom_sf	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EF274E	SEG:seg	:

Description

BnaC08g18450D

Coordinates

chrLK031834:-:521721..524582

Molecular Weight (calculated)

85070.3 Da

IEP (calculated)

9.074

GRAVY (calculated)

-0.264

Length

769 amino acids

Sequence
(BLAST)

001: MTPAKQISKL SSSARSFILS GSRSIAASGS SRAHTDDEPC VSRRQQLQAE KRPSSLVLTP SVVPKKVDDS GRPSLLPQHV SSSHSVSYAS AVIREEEEEA
101: SSAPIGDQIL RAGVKAVNIL SDLANCKLPS FDKGSEVPGL LPKAFMVDPT RPITSVKSSN VKALGRDLAK AYPGSSSKES KTRNPSRSFQ GSKEAARGQH
201: CNTRHVVENV CSVLKSFRWG PAAEEALEKL RDEKKIVMSP RQANQVLMQM NDYGNALGFF YWLKKQPDFK HDDYTYTTML GSLGRAKQFG AINKLLNEMV
301: REGVRPNTVT YNRLIHSYGR ANYLKEAMNV FNQMQKSGCE PDRVTYCTLI DIHAKAGFLD IAMDIHQRMN AAGIETDTFT YSLIINCLGK AGRLPAAHKL
401: FCEMVDKGCA PNLVTYNVMI DLHAKARNYQ SALKLYRDMQ SAGFKPDKVT YSIVMVVLGH CGYLEEAEGV FAKMEEENWV PDEPVYGLLV DLWGKAGNVE
501: KAWRWYQAML GAGVLPNVPT FNSLLSTFLR VNKISEASEL LQNMLALGLR PSLQTYTLLL SCCTDGRSKL DMGFCGQLMA RTGHPAHMFL LKMPSAGPDG
601: QNVRSHANSF LDLMHSEDRE SKRGLVDAVV DFLHKSGLKE EAGSVWEVAA QKNVFPDALR EKSRSYWLIN LHVMSEGTAV TALSRTLAWF RKQMLVSGCG
701: PARIDIVTGW GRRSRVTGTS MVRQAVEELL NVFGSPFFTE SGNSGCFVGC GEALNRWLVQ SYVERMHLL

Best Arabidopsis Sequence Match ( AT1G18900.1 )
(BLAST)

001: MIRAKHISNL SSTARSFFLN GSRTSVTDGN SCVYSDDENC VSKRQQLRKE AGQTEKRPSS ILPKPSVVGC ILPGEVTKPV VPKKVDDFGR PSLLPQHVSS
101: SPALPLKSHS VNYASTVVRE EVEGKASSEP IGDQIFKAGI VAVNFLSDLS NCKIPSYDGG SDAFGLPKSC MVDPTRPISS VKSSNVKAIR REHFAKIYPR
201: SAAKESSVGT TRNPSSNFRG AKEAERTGFV KGFRQVSNSV VGKSLPTTNN TYGKRTSVLQ RPHIDSNRFV PSGFSNSSVE MMKGPSGTAL TSRQYCNSGH
301: IVENVSSVLR RFRWGPAAEE ALQNLGLRID AYQANQVLKQ MNDYGNALGF FYWLKRQPGF KHDGHTYTTM VGNLGRAKQF GAINKLLDEM VRDGCQPNTV
401: TYNRLIHSYG RANYLNEAMN VFNQMQEAGC KPDRVTYCTL IDIHAKAGFL DIAMDMYQRM QAGGLSPDTF TYSVIINCLG KAGHLPAAHK LFCEMVDQGC
501: TPNLVTYNIM MDLHAKARNY QNALKLYRDM QNAGFEPDKV TYSIVMEVLG HCGYLEEAEA VFTEMQQKNW IPDEPVYGLL VDLWGKAGNV EKAWQWYQAM
601: LHAGLRPNVP TCNSLLSTFL RVNKIAEAYE LLQNMLALGL RPSLQTYTLL LSCCTDGRSK LDMGFCGQLM ASTGHPAHMF LLKMPAAGPD GENVRNHANN
701: FLDLMHSEDR ESKRGLVDAV VDFLHKSGQK EEAGSVWEVA AQKNVFPDAL REKSCSYWLI NLHVMSEGTA VTALSRTLAW FRKQMLASGT CPSRIDIVTG
801: WGRRSRVTGT SMVRQAVEEL LNIFGSPFFT ESGNSGCFVG SGEPLNRWLL QSHVERMHLL

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDY2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.