Factsheet for HORVU5Hr1G000760.8

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G012890.2	Barley	cytosol	49.36	97.69
TraesCSU01G073400.1	Wheat	mitochondrion	86.11	86.62
TraesCS5D01G012800.1	Wheat	mitochondrion	84.83	85.43
TraesCS5A01G004000.1	Wheat	mitochondrion	81.68	82.45
Os12t0638900-01	Rice	mitochondrion	73.75	73.57
Zm00001d031217_P003	Maize	mitochondrion	73.16	73.51
CDX68166	Canola	cytosol	43.99	72.36
CDX85855	Canola	cytosol	41.42	72.15
EES17501	Sorghum	mitochondrion	71.53	71.86
Bra003787.1-P	Field mustard	cytosol	40.96	71.34
CDX73110	Canola	cytosol	23.8	68.69
GSMUA_Achr8P15270_001	Banana	mitochondrion	57.29	58.31
CDY45392	Canola	mitochondrion	47.84	55.56
Bra015895.1-P	Field mustard	mitochondrion	47.84	55.56
CDX83800	Canola	plastid	48.31	53.84
PGSC0003DMT400034282	Potato	mitochondrion	53.68	53.24
Bra016533.1-P	Field mustard	plastid	47.49	52.79
AT1G74750.2	Thale cress	plastid	52.04	52.16
Bra025697.1-P	Field mustard	plastid	50.76	52.03
CDY19261	Canola	plastid	50.64	51.91
AT1G18900.3	Thale cress	mitochondrion	52.39	50.68
KRH54492	Soybean	mitochondrion	52.04	50.57
CDX96689	Canola	plastid	46.91	50.5
VIT_17s0000g05510.t01	Wine grape	endoplasmic reticulum	52.51	50.11
CDY26713	Canola	plastid	50.17	50.06
KRH63421	Soybean	plastid	52.28	49.89
Solyc03g113380.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	53.33	49.51
KRH56975	Soybean	mitochondrion	49.12	48.06
CDX73109	Canola	plastid	21.0	43.17
HORVU2Hr1G122510.2	Barley	cytosol	10.27	23.1
HORVU5Hr1G124070.6	Barley	plastid	16.45	19.45
HORVU2Hr1G099330.11	Barley	mitochondrion	15.99	17.65
HORVU4Hr1G067600.1	Barley	nucleus	14.0	17.17

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A287Q6I1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:HORVU5Hr1G000760	EnsemblPlants:HORVU5Hr1G000760.8	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF268	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF160443	SUPFAM:SSF48452	InterPro:Smr_dom
InterPro:Smr_dom_sf	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000B47AD43	SEG:seg	:

Description

No Description!

Coordinates

chrchr5H:+:2883591..2890299

Molecular Weight (calculated)

93919.7 Da

IEP (calculated)

8.715

GRAVY (calculated)

-0.404

Length

857 amino acids

Sequence
(BLAST)

001: FMLRAKQLST LTQCARSFYL SGSRCGSADG ASCTCPDDDA CGSKRQTASA IERRSSVKVQ PPSAQHVAGG AAGYPTHQAV NVIPSTSSPD KEPASSNRGS
101: HPGNRQVQGN NYVQPSKQAA RGISQSGIAG AGVYNELVNL RPSSNNGSSK QAPQAGGANY SNKPLSSGGQ PSSNNKANNQ HSHAGQNTPC APSMQNDFGK
201: GGSRPGYHAK PKQNFSGPAA AVSGSPSQVR NQRHPNQGHS NNNGPNSDGR WAGVQTRNFS APMTAYSGGP SDKPQGPSVG TMKGHGGGPQ SNLRSLKSLR
301: AVEQYYHTLQ QMKWGPMTEH VLDGLRCKID AFQANQVLKL LHDHNIALGF FHWLKRQPGF KHDGHTYTTM IGILGQAKQF GTMRKLLDEM SSVNCKPTVV
401: TYNRIIHAYG RANYLREAVK VFEEMEGAGY QPDRVTYCTL IDIHAKSGYL EVAMDLYGRM QEVGLSPDTF TYSAMVNCLG KGGQLAAAYK LFCEMIDNGC
501: TPNLVTYNII IALQAKARNY DNVVKLYRDM QIAGFRPDKI TYSIVMEVLG HCGHLDEAEA VFLEMRRDWA PDEPVYGLLV DLWGKAGNVD KALGWYHAML
601: QDGLQPNVPT CNSLLSAFLK LNRFQDAYGV LQNMLAQGLV PSLQTYTLLL SCCTDAHAQM GLCCQLMAIT GHPAHMFLLY LPDAEPGGEN VRDHARYFLD
701: MMHSEDRESK RGIMDAVIDF LHKSGLKEEA GFIWEVAAQR NVYPDSVREK SSSYWLINLH LMSEGTAVTA LSRTLAWFHR QMLLMGSCPE RIDIVTGWGR
801: RSRVTGSSLV RQSIEKLLHL FQFPLFAARG NTGCFVGCGE PLSQWLHNPY VERMHLL

Best Arabidopsis Sequence Match ( AT1G18900.1 )
(BLAST)

001: MIRAKHISNL SSTARSFFLN GSRTSVTDGN SCVYSDDENC VSKRQQLRKE AGQTEKRPSS ILPKPSVVGC ILPGEVTKPV VPKKVDDFGR PSLLPQHVSS
101: SPALPLKSHS VNYASTVVRE EVEGKASSEP IGDQIFKAGI VAVNFLSDLS NCKIPSYDGG SDAFGLPKSC MVDPTRPISS VKSSNVKAIR REHFAKIYPR
201: SAAKESSVGT TRNPSSNFRG AKEAERTGFV KGFRQVSNSV VGKSLPTTNN TYGKRTSVLQ RPHIDSNRFV PSGFSNSSVE MMKGPSGTAL TSRQYCNSGH
301: IVENVSSVLR RFRWGPAAEE ALQNLGLRID AYQANQVLKQ MNDYGNALGF FYWLKRQPGF KHDGHTYTTM VGNLGRAKQF GAINKLLDEM VRDGCQPNTV
401: TYNRLIHSYG RANYLNEAMN VFNQMQEAGC KPDRVTYCTL IDIHAKAGFL DIAMDMYQRM QAGGLSPDTF TYSVIINCLG KAGHLPAAHK LFCEMVDQGC
501: TPNLVTYNIM MDLHAKARNY QNALKLYRDM QNAGFEPDKV TYSIVMEVLG HCGYLEEAEA VFTEMQQKNW IPDEPVYGLL VDLWGKAGNV EKAWQWYQAM
601: LHAGLRPNVP TCNSLLSTFL RVNKIAEAYE LLQNMLALGL RPSLQTYTLL LSCCTDGRSK LDMGFCGQLM ASTGHPAHMF LLKMPAAGPD GENVRNHANN
701: FLDLMHSEDR ESKRGLVDAV VDFLHKSGQK EEAGSVWEVA AQKNVFPDAL REKSCSYWLI NLHVMSEGTA VTALSRTLAW FRKQMLASGT CPSRIDIVTG
801: WGRRSRVTGT SMVRQAVEEL LNIFGSPFFT ESGNSGCFVG SGEPLNRWLL QSHVERMHLL

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDY2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.