Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G319500.1 | Wheat | plastid | 88.97 | 91.1 |
| TraesCS5B01G559600.1 | Wheat | plastid | 88.97 | 90.59 |
| TraesCS5D01G565800.1 | Wheat | mitochondrion, plastid | 86.07 | 84.21 |
| Os03t0856100-01 | Rice | plastid | 64.28 | 72.81 |
| Zm00001d034892_P001 | Maize | plastid | 71.31 | 72.21 |
| EER93066 | Sorghum | plastid | 71.17 | 71.47 |
| GSMUA_Achr11P... | Banana | plastid | 49.79 | 53.96 |
| PGSC0003DMT400085913 | Potato | plastid | 46.76 | 47.68 |
| PGSC0003DMT400045128 | Potato | plastid | 46.76 | 47.68 |
| Solyc08g077140.1.1 | Tomato | nucleus | 17.52 | 47.04 |
| VIT_02s0012g01090.t01 | Wine grape | plastid | 46.9 | 47.03 |
| CDX77673 | Canola | plastid | 44.97 | 45.85 |
| AT5G46580.1 | Thale cress | plastid | 44.69 | 45.57 |
| KRH58221 | Soybean | cytosol | 44.69 | 45.51 |
| Bra025013.1-P | Field mustard | plastid | 44.55 | 45.43 |
| CDY33481 | Canola | plastid | 44.55 | 45.43 |
| KRH04318 | Soybean | cytosol | 39.17 | 43.36 |
| HORVU2Hr1G122510.2 | Barley | cytosol | 17.79 | 33.86 |
| HORVU4Hr1G067600.1 | Barley | nucleus | 29.93 | 31.04 |
| HORVU0Hr1G012890.2 | Barley | cytosol | 13.38 | 22.4 |
| HORVU5Hr1G000760.8 | Barley | mitochondrion | 19.45 | 16.45 |
| HORVU2Hr1G099330.11 | Barley | mitochondrion | 17.1 | 15.98 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | UniProt:A0A287T195 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 |
| EnsemblPlantsGene:HORVU5Hr1G124070 | EnsemblPlants:HORVU5Hr1G124070.6 | InterPro:IPR002625 | InterPro:IPR002885 | InterPro:IPR011990 | PFAM:PF13041 |
| PFAM:PF13812 | PFAM:PF17177 | InterPro:PPR_long | PFscan:PS50828 | PFscan:PS51375 | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF357 | InterPro:Pentatricopeptide_repeat | SMART:SM00463 | InterPro:Smr_dom | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI000B478D38 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr5H:-:665171701..665174621
Molecular Weight (calculated)
80062.9 Da
IEP (calculated)
6.873
GRAVY (calculated)
-0.198
Length
725 amino acids
Sequence
(BLAST)
(BLAST)
001: RRTQSKTPLH SFSSSIRSAM ATAAAFLFHA PPRGHHHNHK TKPATRPTTT LCSAAPSSTP SLADQLEPLA RTLLTDKPTP AADRAQRPTP EPTWVNPSRP
101: RPTVLSLRRQ RRRPASSHPS SAPLQPLLRD LRALPEDADL APTLHAFFPL PDSPPTSSDA LLLLNYLHPS WRKTLSLLAY LRGLPADAGF AVDTILFNVA
201: LKSLRAARRW DEAELLALDM VDSGVPLDNI TYSTLITAAR RCRQFAKAVE WFERMYSPGS AVLPDEVTYS AVLDVYAQLR MKEEVLALFD RARGSGWKPD
301: HVAFAVLAKM FGEAGDYDGI QFVFKEMREV GTKPNIFVYN ALLEALGKTG KPGLARNLFE EMTAEGVEPN ARTLTAVAKI YGRARWGRDA LQLWDQMREK
401: KIPADSILCN TLLSMCADVG LVAEAEQLFE EMKDPDLTDV PQPDKWSYTA MINIYGSIKD ADRALQLFVE MLQSGIEANI MSYTIVIQCL GKANRIRDAV
501: EVLEAGLERG LKPDDRLCGC LLSVVALSTG EETELVLACL EKFNGNLVKL IRMLGDDQVG ADELKEQLKA VLNAAETDVR RPYCNCLIDI CQNHGLPARR
601: PRELFRLAQG YGLYSKLHIR KDDEWLLDLR SLSVGAAKTA FDDWMAALTE RAVQDQPLPQ SFNVFTGSST HKFAQGLASA FAAHLEEAAA PFRPSESQVG
701: SFVSSRDELV LWLQTSSSSS PVVAG
101: RPTVLSLRRQ RRRPASSHPS SAPLQPLLRD LRALPEDADL APTLHAFFPL PDSPPTSSDA LLLLNYLHPS WRKTLSLLAY LRGLPADAGF AVDTILFNVA
201: LKSLRAARRW DEAELLALDM VDSGVPLDNI TYSTLITAAR RCRQFAKAVE WFERMYSPGS AVLPDEVTYS AVLDVYAQLR MKEEVLALFD RARGSGWKPD
301: HVAFAVLAKM FGEAGDYDGI QFVFKEMREV GTKPNIFVYN ALLEALGKTG KPGLARNLFE EMTAEGVEPN ARTLTAVAKI YGRARWGRDA LQLWDQMREK
401: KIPADSILCN TLLSMCADVG LVAEAEQLFE EMKDPDLTDV PQPDKWSYTA MINIYGSIKD ADRALQLFVE MLQSGIEANI MSYTIVIQCL GKANRIRDAV
501: EVLEAGLERG LKPDDRLCGC LLSVVALSTG EETELVLACL EKFNGNLVKL IRMLGDDQVG ADELKEQLKA VLNAAETDVR RPYCNCLIDI CQNHGLPARR
601: PRELFRLAQG YGLYSKLHIR KDDEWLLDLR SLSVGAAKTA FDDWMAALTE RAVQDQPLPQ SFNVFTGSST HKFAQGLASA FAAHLEEAAA PFRPSESQVG
701: SFVSSRDELV LWLQTSSSSS PVVAG
001: MATVLTTAID VCFNPQNSDT KKHSLFLKPS LFRQSRSRKL NISCSSLKQP KTLEEEPITT KTPSLSEQLK PLSATTLRQE QTQILSKPKS VWVNPTRPKR
101: SVLSLQRQKR SAYSYNPQIK DLRAFALKLN SSIFTEKSEF LSLLDEIPHP PNRDNALLVL NSLREWQKTH TFFNWVKSKS LFPMETIFYN VTMKSLRFGR
201: QFQLIEEMAL EMVKDGVELD NITYSTIITC AKRCNLYNKA IEWFERMYKT GLMPDEVTYS AILDVYSKSG KVEEVLSLYE RAVATGWKPD AIAFSVLGKM
301: FGEAGDYDGI RYVLQEMKSM DVKPNVVVYN TLLEAMGRAG KPGLARSLFN EMLEAGLTPN EKTLTALVKI YGKARWARDA LQLWEEMKAK KWPMDFILYN
401: TLLNMCADIG LEEEAERLFN DMKESVQCRP DNFSYTAMLN IYGSGGKAEK AMELFEEMLK AGVQVNVMGC TCLVQCLGKA KRIDDVVYVF DLSIKRGVKP
501: DDRLCGCLLS VMALCESSED AEKVMACLER ANKKLVTFVN LIVDEKTEYE TVKEEFKLVI NATQVEARRP FCNCLIDICR GNNRHERAHE LLYLGTLFGL
601: YPGLHNKTIK EWSLDVRSLS VGAAETALEE WMRTLANIIK RQEELPELFL AQTGTGTHRF SQGLANSFAL HLQQLSAPFR QSDRPGIFVA TKEDLVSWLE
701: SKFPPLVTSQ A
101: SVLSLQRQKR SAYSYNPQIK DLRAFALKLN SSIFTEKSEF LSLLDEIPHP PNRDNALLVL NSLREWQKTH TFFNWVKSKS LFPMETIFYN VTMKSLRFGR
201: QFQLIEEMAL EMVKDGVELD NITYSTIITC AKRCNLYNKA IEWFERMYKT GLMPDEVTYS AILDVYSKSG KVEEVLSLYE RAVATGWKPD AIAFSVLGKM
301: FGEAGDYDGI RYVLQEMKSM DVKPNVVVYN TLLEAMGRAG KPGLARSLFN EMLEAGLTPN EKTLTALVKI YGKARWARDA LQLWEEMKAK KWPMDFILYN
401: TLLNMCADIG LEEEAERLFN DMKESVQCRP DNFSYTAMLN IYGSGGKAEK AMELFEEMLK AGVQVNVMGC TCLVQCLGKA KRIDDVVYVF DLSIKRGVKP
501: DDRLCGCLLS VMALCESSED AEKVMACLER ANKKLVTFVN LIVDEKTEYE TVKEEFKLVI NATQVEARRP FCNCLIDICR GNNRHERAHE LLYLGTLFGL
601: YPGLHNKTIK EWSLDVRSLS VGAAETALEE WMRTLANIIK RQEELPELFL AQTGTGTHRF SQGLANSFAL HLQQLSAPFR QSDRPGIFVA TKEDLVSWLE
701: SKFPPLVTSQ A
Arabidopsis Description
Pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS25]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.