Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G319500.1 | Wheat | plastid | 94.24 | 94.77 |
| HORVU5Hr1G124070.6 | Barley | plastid | 90.59 | 88.97 |
| TraesCS5D01G565800.1 | Wheat | mitochondrion, plastid | 87.78 | 84.35 |
| Os03t0856100-01 | Rice | plastid | 67.13 | 74.69 |
| Zm00001d034892_P001 | Maize | plastid | 73.46 | 73.04 |
| EER93066 | Sorghum | plastid | 73.31 | 72.3 |
| GSMUA_Achr11P... | Banana | plastid | 51.26 | 54.56 |
| VIT_02s0012g01090.t01 | Wine grape | plastid | 48.17 | 47.44 |
| PGSC0003DMT400045128 | Potato | plastid | 46.91 | 46.98 |
| PGSC0003DMT400085913 | Potato | plastid | 46.91 | 46.98 |
| AT5G46580.1 | Thale cress | plastid | 45.93 | 45.99 |
| CDX77673 | Canola | plastid | 45.79 | 45.85 |
| CDY33481 | Canola | plastid | 45.51 | 45.57 |
| Bra025013.1-P | Field mustard | plastid | 45.51 | 45.57 |
| Solyc08g077140.1.1 | Tomato | nucleus | 17.28 | 45.56 |
| KRH58221 | Soybean | cytosol | 45.51 | 45.51 |
| KRH04318 | Soybean | cytosol | 39.75 | 43.21 |
| TraesCS4B01G245000.1 | Wheat | plastid | 31.88 | 32.95 |
| TraesCS2B01G444000.1 | Wheat | plastid | 18.26 | 16.05 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 |
| InterPro:IPR002885 | InterPro:IPR011990 | PFAM:PF13812 | PFAM:PF17177 | InterPro:PPR_long | PFscan:PS51375 |
| PANTHER:PTHR24015 | PANTHER:PTHR24015:SF357 | InterPro:Pentatricopeptide_repeat | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | EnsemblPlantsGene:TraesCS5B01G559600 |
| EnsemblPlants:TraesCS5B01G559600.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:706353905..706356043
Molecular Weight (calculated)
78450.2 Da
IEP (calculated)
6.974
GRAVY (calculated)
-0.186
Length
712 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPLPAPTAA SAFLFHAPPR GHHHHHKPKP SSRPTTTLCS AVPSSTPSLA DQLEPLSRTL LTDKPTPAAD RAQRPTPEPT WVNPSRPRPT VLSLRRQRRR
101: PAASHPSSAP LQPLLRDLRA LPEDADLAPT LSAFFPLPGS PPTSSDALLL LNYLHPSWRK TLSLFAYLRG LPADAGFTVD TILFNVALKS LRAARRWDEA
201: ERLALDMVDS GVPLDNITYS TLITAARRCR QFAKAVEWFE RMYSPPSGVL PDEVTYSAVL DVYAQLRMKE EVLALFDRAR GSGWKPDHVA FAVLAKMFGE
301: AGDYDGIQFV FKEMREVGIK PNIFVYNALL EALGKTGKPG LARNLFEEMA AEGVEPNART LTAVAKIYGR ARWGRDALQL WDQMRDKKIP ADSILCNTLL
401: SMCADVGLVA EAEQLFEEMK DPDLTDVPQP DKWSYTAMIN IYGSIKDADR ALQLFVEMLQ SGIEANIMSY TIVIQCLGKA NRIRDAVEVL EAGLERGLKP
501: DDRLCGCLLS VVALSSGEET ELVLGCLEKF NGNLVKLIRM LGDDQVGADE LKEQLKAVLN AAETEVRRPY CNCLIDICQN HGLPARRPRE LFRLAQGYGL
601: YSKLHIRKDD EWLLDLRSLS VGAAKTAFDD WMVALSERAA QGQTLPQSFN VFTGSSTHKF AQGLASAFAA HLKEAAAPFR PSESQVGSFV SSRDELVPWL
701: QTSSPSSPVV AG
101: PAASHPSSAP LQPLLRDLRA LPEDADLAPT LSAFFPLPGS PPTSSDALLL LNYLHPSWRK TLSLFAYLRG LPADAGFTVD TILFNVALKS LRAARRWDEA
201: ERLALDMVDS GVPLDNITYS TLITAARRCR QFAKAVEWFE RMYSPPSGVL PDEVTYSAVL DVYAQLRMKE EVLALFDRAR GSGWKPDHVA FAVLAKMFGE
301: AGDYDGIQFV FKEMREVGIK PNIFVYNALL EALGKTGKPG LARNLFEEMA AEGVEPNART LTAVAKIYGR ARWGRDALQL WDQMRDKKIP ADSILCNTLL
401: SMCADVGLVA EAEQLFEEMK DPDLTDVPQP DKWSYTAMIN IYGSIKDADR ALQLFVEMLQ SGIEANIMSY TIVIQCLGKA NRIRDAVEVL EAGLERGLKP
501: DDRLCGCLLS VVALSSGEET ELVLGCLEKF NGNLVKLIRM LGDDQVGADE LKEQLKAVLN AAETEVRRPY CNCLIDICQN HGLPARRPRE LFRLAQGYGL
601: YSKLHIRKDD EWLLDLRSLS VGAAKTAFDD WMVALSERAA QGQTLPQSFN VFTGSSTHKF AQGLASAFAA HLKEAAAPFR PSESQVGSFV SSRDELVPWL
701: QTSSPSSPVV AG
001: MATVLTTAID VCFNPQNSDT KKHSLFLKPS LFRQSRSRKL NISCSSLKQP KTLEEEPITT KTPSLSEQLK PLSATTLRQE QTQILSKPKS VWVNPTRPKR
101: SVLSLQRQKR SAYSYNPQIK DLRAFALKLN SSIFTEKSEF LSLLDEIPHP PNRDNALLVL NSLREWQKTH TFFNWVKSKS LFPMETIFYN VTMKSLRFGR
201: QFQLIEEMAL EMVKDGVELD NITYSTIITC AKRCNLYNKA IEWFERMYKT GLMPDEVTYS AILDVYSKSG KVEEVLSLYE RAVATGWKPD AIAFSVLGKM
301: FGEAGDYDGI RYVLQEMKSM DVKPNVVVYN TLLEAMGRAG KPGLARSLFN EMLEAGLTPN EKTLTALVKI YGKARWARDA LQLWEEMKAK KWPMDFILYN
401: TLLNMCADIG LEEEAERLFN DMKESVQCRP DNFSYTAMLN IYGSGGKAEK AMELFEEMLK AGVQVNVMGC TCLVQCLGKA KRIDDVVYVF DLSIKRGVKP
501: DDRLCGCLLS VMALCESSED AEKVMACLER ANKKLVTFVN LIVDEKTEYE TVKEEFKLVI NATQVEARRP FCNCLIDICR GNNRHERAHE LLYLGTLFGL
601: YPGLHNKTIK EWSLDVRSLS VGAAETALEE WMRTLANIIK RQEELPELFL AQTGTGTHRF SQGLANSFAL HLQQLSAPFR QSDRPGIFVA TKEDLVSWLE
701: SKFPPLVTSQ A
101: SVLSLQRQKR SAYSYNPQIK DLRAFALKLN SSIFTEKSEF LSLLDEIPHP PNRDNALLVL NSLREWQKTH TFFNWVKSKS LFPMETIFYN VTMKSLRFGR
201: QFQLIEEMAL EMVKDGVELD NITYSTIITC AKRCNLYNKA IEWFERMYKT GLMPDEVTYS AILDVYSKSG KVEEVLSLYE RAVATGWKPD AIAFSVLGKM
301: FGEAGDYDGI RYVLQEMKSM DVKPNVVVYN TLLEAMGRAG KPGLARSLFN EMLEAGLTPN EKTLTALVKI YGKARWARDA LQLWEEMKAK KWPMDFILYN
401: TLLNMCADIG LEEEAERLFN DMKESVQCRP DNFSYTAMLN IYGSGGKAEK AMELFEEMLK AGVQVNVMGC TCLVQCLGKA KRIDDVVYVF DLSIKRGVKP
501: DDRLCGCLLS VMALCESSED AEKVMACLER ANKKLVTFVN LIVDEKTEYE TVKEEFKLVI NATQVEARRP FCNCLIDICR GNNRHERAHE LLYLGTLFGL
601: YPGLHNKTIK EWSLDVRSLS VGAAETALEE WMRTLANIIK RQEELPELFL AQTGTGTHRF SQGLANSFAL HLQQLSAPFR QSDRPGIFVA TKEDLVSWLE
701: SKFPPLVTSQ A
Arabidopsis Description
Pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS25]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.