Skip to main content
crop-pal logo
Thale cress
Search for another protein from :
Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 6
  • cytosol 2
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:cytosol
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra025013.1-P Field mustard plastid 83.83 83.83
CDY33481 Canola plastid 83.83 83.83
CDX77673 Canola plastid 83.69 83.69
Solyc08g077140.1.1 Tomato nucleus 24.61 64.81
VIT_02s0012g01090.t01 Wine grape plastid 65.82 64.73
PGSC0003DMT400085913 Potato plastid 63.01 63.01
PGSC0003DMT400045128 Potato plastid 63.01 63.01
KRH58221 Soybean cytosol 61.74 61.66
KRH04318 Soybean cytosol 53.87 58.47
GSMUA_Achr11P... Banana plastid 50.91 54.11
Os03t0856100-01 Rice plastid 42.48 47.19
EER93066 Sorghum plastid 46.84 46.12
TraesCS5B01G559600.1 Wheat plastid 45.99 45.93
Zm00001d034892_P001 Maize plastid 45.99 45.67
TraesCS4A01G319500.1 Wheat plastid 45.15 45.34
HORVU5Hr1G124070.6 Barley plastid 45.57 44.69
TraesCS5D01G565800.1 Wheat mitochondrion, plastid 44.87 43.05
AT4G16390.1 Thale cress plastid 34.04 34.47
AT1G79490.1 Thale cress mitochondrion, plastid 18.14 15.43
AT1G74750.2 Thale cress plastid 18.0 14.97
AT1G18900.3 Thale cress mitochondrion 17.72 14.22
Protein Annotations
Gene3D:1.25.40.10MapMan:35.1EntrezGene:834701UniProt:A0A178UPY9ProteinID:AED95400.1ArrayExpress:AT5G46580
EnsemblPlantsGene:AT5G46580RefSeq:AT5G46580TAIR:AT5G46580RefSeq:AT5G46580-TAIR-GEnsemblPlants:AT5G46580.1TAIR:AT5G46580.1
Unigene:At.65647ProteinID:BAA97529.1GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003824
GO:GO:0004518GO:GO:0004519GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009451
GO:GO:0009507GO:GO:0009536GO:GO:0009987GO:GO:0016787GO:GO:0090305InterPro:IPR002625
InterPro:IPR002885InterPro:IPR011990RefSeq:NP_199470.1ProteinID:OAO95417.1PFAM:PF13041PFAM:PF13812
PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PO:PO:0025281PFscan:PS50828PFscan:PS51375PANTHER:PTHR24015PANTHER:PTHR24015:SF357InterPro:Pentatricopeptide_repeat
UniProt:Q9LS25SUPFAM:SSF48452InterPro:Smr_domTIGRFAMs:TIGR00756InterPro:TPR-like_helical_dom_sfUniParc:UPI000009E4F9
Description
Pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS25]
Coordinates
chr5:-:18897445..18899646
Molecular Weight (calculated)
80884.0 Da
IEP (calculated)
8.215
GRAVY (calculated)
-0.256
Length
711 amino acids
Sequence
(BLAST)
001: MATVLTTAID VCFNPQNSDT KKHSLFLKPS LFRQSRSRKL NISCSSLKQP KTLEEEPITT KTPSLSEQLK PLSATTLRQE QTQILSKPKS VWVNPTRPKR
101: SVLSLQRQKR SAYSYNPQIK DLRAFALKLN SSIFTEKSEF LSLLDEIPHP PNRDNALLVL NSLREWQKTH TFFNWVKSKS LFPMETIFYN VTMKSLRFGR
201: QFQLIEEMAL EMVKDGVELD NITYSTIITC AKRCNLYNKA IEWFERMYKT GLMPDEVTYS AILDVYSKSG KVEEVLSLYE RAVATGWKPD AIAFSVLGKM
301: FGEAGDYDGI RYVLQEMKSM DVKPNVVVYN TLLEAMGRAG KPGLARSLFN EMLEAGLTPN EKTLTALVKI YGKARWARDA LQLWEEMKAK KWPMDFILYN
401: TLLNMCADIG LEEEAERLFN DMKESVQCRP DNFSYTAMLN IYGSGGKAEK AMELFEEMLK AGVQVNVMGC TCLVQCLGKA KRIDDVVYVF DLSIKRGVKP
501: DDRLCGCLLS VMALCESSED AEKVMACLER ANKKLVTFVN LIVDEKTEYE TVKEEFKLVI NATQVEARRP FCNCLIDICR GNNRHERAHE LLYLGTLFGL
601: YPGLHNKTIK EWSLDVRSLS VGAAETALEE WMRTLANIIK RQEELPELFL AQTGTGTHRF SQGLANSFAL HLQQLSAPFR QSDRPGIFVA TKEDLVSWLE
701: SKFPPLVTSQ A
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.