Factsheet for VIT_02s0012g01090.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g077140.1.1	Tomato	nucleus	27.25	72.96
PGSC0003DMT400085913	Potato	plastid	69.99	71.17
PGSC0003DMT400045128	Potato	plastid	69.99	71.17
KRH58221	Soybean	cytosol	66.25	67.28
Bra025013.1-P	Field mustard	plastid	65.98	67.09
CDY33481	Canola	plastid	65.98	67.09
CDX77673	Canola	plastid	65.7	66.81
AT5G46580.1	Thale cress	plastid	64.73	65.82
KRH04318	Soybean	cytosol	57.81	63.82
GSMUA_Achr11P...	Banana	plastid	54.36	58.74
Os03t0856100-01	Rice	plastid	43.98	49.69
EER93066	Sorghum	plastid	48.27	48.34
TraesCS4A01G319500.1	Wheat	plastid	47.3	48.31
TraesCS5B01G559600.1	Wheat	plastid	47.44	48.17
Zm00001d034892_P001	Maize	plastid	47.44	47.91
HORVU5Hr1G124070.6	Barley	plastid	47.03	46.9
TraesCS5D01G565800.1	Wheat	mitochondrion, plastid	46.33	45.21
VIT_00s0194g00310.t01	Wine grape	cytosol, extracellular	11.76	38.46
VIT_00s0194g00270.t01	Wine grape	plastid	35.55	36.66
VIT_12s0028g00090.t01	Wine grape	plastid	17.7	15.96
VIT_17s0000g05510.t01	Wine grape	endoplasmic reticulum	19.23	15.48

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100259066	wikigene:100259066	MapMan:35.1	ProteinID:CCB57915	ProteinID:CCB57915.1
UniProt:F6HTA5	EMBL:FN596247	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	InterPro:IPR002625
InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100259066	wikigene:LOC100259066	PFAM:PF13041	PFAM:PF13812
PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF357	InterPro:Pentatricopeptide_repeat	SMART:SM00463
SUPFAM:SSF81901	InterPro:Smr_dom	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00015C8FF2	ArrayExpress:VIT_02s0012g01090
EnsemblPlantsGene:VIT_02s0012g01090	EnsemblPlants:VIT_02s0012g01090.t01	RefSeq:XP_002278451	RefSeq:XP_002278451.1	SEG:seg	:

Description

No Description!

Coordinates

chr2:+:7059966..7062413

Molecular Weight (calculated)

81164.6 Da

IEP (calculated)

7.736

GRAVY (calculated)

-0.273

Length

723 amino acids

Sequence
(BLAST)

001: MGSATLCTGV DVHFSIPHPS HTTKYPNLFS KSTKFSSNTF TIRCNSSSRS PPKPKPKPKP TSSDSEQTNH QNPSLSEQLK PLSKTILTRD HSGQTHLVSK
101: PKSTWINPTK PKPSVLSLQR HKRHNYSYNP QIRDLKLFAK KINESESSDE SEFLAVLEQI PHPPTRDNAL LLLNSLKPWP KTYLFFNWIK TQNLFPMETI
201: FYNVTMKSLR FGRQFQLIEE LANEMISTGV ELDNITYSTI ITCAKRCNLF DKAVKWFERM YKTGLMPDEV TYSAILDVYA KLGKVEEVLS LYERGRASGW
301: KPDPIAFAVL GKMFGEAGDY DGIRYVLQEM KSLGVQPNLV VYNTLLEAMG KAGKPGLARS LFEEMVGSGV IPDAKTLTAL VKIYGKARWA RDALELWERM
401: RSNGWPMDFI LYNTLLSMCA DLGLEEEAEK LFEDMKKSEH CRPDSWSYTA MLNIYGSGGN VDRAMQLFDE MSELGVQINV MGCTCLSQCL GRARRIDDLV
501: KVFEVSLERG VKPDDRLCGC LLSVVSFCEG AEDANKVLAC LQQANPKLVA FVNLLEEKIS FEALKEEFRG ILTDTAVEAR RPFCNCLIDI CRNRSLHERA
601: HELLYLGTLY GLYPGLHNRT ADEWCLDVRS LSVGAAHTAL EEWMGTLSKI VQREEALPEA FSANTGTGTH KFSQGLASAF ASHVKKLAAP FTQSEEKAGC
701: FVATREDLVS WVQSRILSPA AVV

Best Arabidopsis Sequence Match ( AT5G46580.1 )
(BLAST)

001: MATVLTTAID VCFNPQNSDT KKHSLFLKPS LFRQSRSRKL NISCSSLKQP KTLEEEPITT KTPSLSEQLK PLSATTLRQE QTQILSKPKS VWVNPTRPKR
101: SVLSLQRQKR SAYSYNPQIK DLRAFALKLN SSIFTEKSEF LSLLDEIPHP PNRDNALLVL NSLREWQKTH TFFNWVKSKS LFPMETIFYN VTMKSLRFGR
201: QFQLIEEMAL EMVKDGVELD NITYSTIITC AKRCNLYNKA IEWFERMYKT GLMPDEVTYS AILDVYSKSG KVEEVLSLYE RAVATGWKPD AIAFSVLGKM
301: FGEAGDYDGI RYVLQEMKSM DVKPNVVVYN TLLEAMGRAG KPGLARSLFN EMLEAGLTPN EKTLTALVKI YGKARWARDA LQLWEEMKAK KWPMDFILYN
401: TLLNMCADIG LEEEAERLFN DMKESVQCRP DNFSYTAMLN IYGSGGKAEK AMELFEEMLK AGVQVNVMGC TCLVQCLGKA KRIDDVVYVF DLSIKRGVKP
501: DDRLCGCLLS VMALCESSED AEKVMACLER ANKKLVTFVN LIVDEKTEYE TVKEEFKLVI NATQVEARRP FCNCLIDICR GNNRHERAHE LLYLGTLFGL
601: YPGLHNKTIK EWSLDVRSLS VGAAETALEE WMRTLANIIK RQEELPELFL AQTGTGTHRF SQGLANSFAL HLQQLSAPFR QSDRPGIFVA TKEDLVSWLE
701: SKFPPLVTSQ A

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS25]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.