Factsheet for VIT_17s0000g05510.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85855	Canola	cytosol	46.21	84.35
CDX68166	Canola	cytosol	48.66	83.88
Bra003787.1-P	Field mustard	cytosol	45.77	83.54
CDX73110	Canola	cytosol	26.28	79.46
HORVU0Hr1G012890.2	Barley	cytosol	35.41	73.44
Bra015895.1-P	Field mustard	mitochondrion	53.45	65.04
CDY45392	Canola	mitochondrion	53.45	65.04
PGSC0003DMT400034282	Potato	mitochondrion	61.36	63.77
AT1G74750.2	Thale cress	plastid	59.58	62.57
KRH54492	Soybean	mitochondrion	61.02	62.13
CDY19261	Canola	plastid	56.79	61.0
Bra025697.1-P	Field mustard	plastid	56.35	60.53
KRH63421	Soybean	plastid	60.47	60.47
Bra016533.1-P	Field mustard	plastid	51.56	60.05
Solyc03g113380.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	61.47	59.8
CDX83800	Canola	plastid	50.89	59.43
AT1G18900.3	Thale cress	mitochondrion	58.57	59.37
KRH56975	Soybean	mitochondrion	57.8	59.25
CDY26713	Canola	plastid	55.79	58.32
CDX96689	Canola	plastid	51.0	57.54
GSMUA_Achr8P15270_001	Banana	mitochondrion	51.56	54.99
EES17501	Sorghum	mitochondrion	51.89	54.63
TraesCS5A01G004000.1	Wheat	mitochondrion	50.45	53.36
TraesCS5D01G012800.1	Wheat	mitochondrion	50.45	53.23
Zm00001d031217_P003	Maize	mitochondrion	50.56	53.22
Os12t0638900-01	Rice	mitochondrion	50.45	52.74
TraesCSU01G073400.1	Wheat	mitochondrion	50.0	52.7
HORVU5Hr1G000760.8	Barley	mitochondrion	50.11	52.51
CDX73109	Canola	plastid	24.16	52.04
VIT_00s0194g00310.t01	Wine grape	cytosol, extracellular	4.79	19.46
VIT_02s0012g01090.t01	Wine grape	plastid	15.48	19.23
VIT_00s0194g00270.t01	Wine grape	plastid	14.92	19.12
VIT_12s0028g00090.t01	Wine grape	plastid	16.7	18.7

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100251827	wikigene:100251827	MapMan:35.1	ProteinID:CCB43124	ProteinID:CCB43124.1
UniProt:F6GTB5	EMBL:FN594950	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990
EntrezGene:LOC100251827	wikigene:LOC100251827	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS50828
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF268	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF160443
InterPro:Smr_dom	InterPro:Smr_dom_sf	TIGR:TC58033	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000210A2E2
ArrayExpress:VIT_17s0000g05510	EnsemblPlantsGene:VIT_17s0000g05510	EnsemblPlants:VIT_17s0000g05510.t01	unigene:Vvi.3658	RefSeq:XP_002266698	RefSeq:XP_002266698.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr17:-:6000517..6005645

Molecular Weight (calculated)

99257.2 Da

IEP (calculated)

8.656

GRAVY (calculated)

-0.176

Length

898 amino acids

Sequence
(BLAST)

001: MLMFFSYYFE GVELGKVLLY LQIMLRTKQI GPLSNSARSI LISGTRSSTP DGNSCPCSED ETCVSTKQHA RNEVLIMQKQ TTLASKTAAR VGPLFLGDAV
101: KVVGSQKVES VEHATSLAQV VAAPRSVVGS DCVSYVSDNV GVNNDAVHAP PISDQFIRAG IVAVNFLSDL VNYKIPMSDG SGMLKLPQNC MVDPTKPLSK
201: IKSTNIKPIR KGKFSKVRAE SSANIAAASN STSSYHSTRG KGDKSGSVKG CSHVGDTWTR NTVDTRSLSS DTHNKRSMPQ KSKAYSNYST SNSNFNSNVR
301: NSEPRFVGGI AGGFSKPLRD TKMIGIAPVS RQFGSSGHVV ENVSRILRQL SWGPAAEEAL RNLNCLMDAY QANQVLKQIQ DHPVALGFFY WLKRQTGFKH
401: DGHTYTTMVG ILGRARQFGA INKLLAEMVR DGCQPNVVTY NRLIHSYGRA NYLNEAVSVF DRMQEAGCQP DRVTYCTLID IHAKAGFLDV ALHMYQKMQE
501: AHLSPDTFTY SVIINCLGKA GHLTSAHKLF CEMVDQGCVP NLVTYNIMIA LQAKARNYPT ALELYRDMQN AGFQPDKVTY SIVMEVLGHC GHLEEAEAIF
601: TEMKRKNWVP DEPVYGLLVD LWGKVGNVEK SWEWYQAMLN AGLCPNVPTC NSLLSAFLRV HRLSDAYNLL QSMLRLGLQP SLQTYTLLLS CCTEARSSFD
701: MGFCGELMAV TGHPAHMFLL SMPAAGPDGQ NVRDHVSKFL DLMHSEDRES KRGLVDAVVD FLHKSGLKEE AGSVWEVAAQ KNVYPDAVRE KSSCYWLINL
801: HFMSDGTAVT ALSRTLAWFH REMLVSGTVP SRIDIVTGWG RRSRVTGASL VRQAVQELLH IFSFPFFTEN GNSGCFVGRG EPLGRWLLQS YVERMHLL

Best Arabidopsis Sequence Match ( AT1G74750.2 )
(BLAST)

001: MIRAKHISNL SSSARSFFLS GSRPSAADGN SCTCAEDESG VSKRQQIRTE VVQTGKRASN LAAGLAGSIL PVEAGKPLVV PKTVEHFTRP SLLPQHVSSP
101: ALPGKADSVN HASAIIKEDV GVPIGDQIFK AGIGNVNLLS DIANYKIPLS DGTEVVGLPK SCMVDPTRPI SGVKSSNVKV IRREHLAKVY PRSADRVPIN
201: SSPGTKQASN DVAGKSFEAH DLLSNNVSGK RKIMPQRPYT DSTRYASGGC DYSVHSSDDR TIISSVEGFG KPSREMMKVT PRTAPTPRQH CNPGYVVENV
301: SSILRRFKWG HAAEEALHNF GFRMDAYQAN QVLKQMDNYA NALGFFYWLK RQPGFKHDGH TYTTMVGNLG RAKQFGEINK LLDEMVRDGC KPNTVTYNRL
401: IHSYGRANYL KEAMNVFNQM QEAGCEPDRV TYCTLIDIHA KAGFLDIAMD MYQRMQEAGL SPDTFTYSVI INCLGKAGHL PAAHRLFCEM VGQGCTPNLV
501: TFNIMIALHA KARNYETALK LYRDMQNAGF QPDKVTYSIV MEVLGHCGFL EEAEGVFAEM QRKNWVPDEP VYGLLVDLWG KAGNVDKAWQ WYQAMLQAGL
601: RPNVPTCNSL LSTFLRVHRM SEAYNLLQSM LALGLHPSLQ TYTLLLSCCT DARSNFDMGF CGQLMAVSGH PAHMFLLKMP PAGPDGQKVR DHVSNFLDFM
701: HSEDRESKRG LMDAVVDFLH KSGLKEEAGS VWEVAAGKNV YPDALREKSY SYWLINLHVM SEGTAVIALS RTLAWFRKQM LVSGDCPSRI DIVTGWGRRS
801: RVTGTSMVRQ AVEELLNIFN FPFFTENGNS GCFVGSGEPL KNWLLESYVE RMHLL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g74750 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSF9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.