CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54492	Soybean	mitochondrion	93.32	95.01
CDX85855	Canola	cytosol	44.88	81.91
Bra003787.1-P	Field mustard	cytosol	44.54	81.3
CDX68166	Canola	cytosol	47.1	81.19
CDX73110	Canola	cytosol	25.61	77.44
HORVU0Hr1G012890.2	Barley	cytosol	35.63	73.9
KRH56975	Soybean	mitochondrion	70.49	72.26
Bra015895.1-P	Field mustard	mitochondrion	51.56	62.74
CDY45392	Canola	mitochondrion	51.56	62.74
PGSC0003DMT400034282	Potato	mitochondrion	58.91	61.23
VIT_17s0000g05510.t01	Wine grape	endoplasmic reticulum	60.47	60.47
Bra025697.1-P	Field mustard	plastid	55.46	59.57
CDX83800	Canola	plastid	51.0	59.56
Bra016533.1-P	Field mustard	plastid	50.89	59.27
CDY19261	Canola	plastid	55.12	59.21
AT1G74750.2	Thale cress	plastid	56.35	59.18
Solyc03g113380.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	59.58	57.96
CDY26713	Canola	plastid	54.9	57.39
AT1G18900.3	Thale cress	mitochondrion	56.57	57.34
CDX96689	Canola	plastid	50.33	56.78
TraesCS5A01G004000.1	Wheat	mitochondrion	51.34	54.3
GSMUA_Achr8P15270_001	Banana	mitochondrion	50.67	54.04
EES17501	Sorghum	mitochondrion	51.22	53.93
Zm00001d031217_P003	Maize	mitochondrion	50.78	53.46
TraesCS5D01G012800.1	Wheat	mitochondrion	50.22	53.0
Os12t0638900-01	Rice	mitochondrion	50.67	52.97
TraesCSU01G073400.1	Wheat	mitochondrion	50.11	52.82
HORVU5Hr1G000760.8	Barley	mitochondrion	49.89	52.28
CDX73109	Canola	plastid	22.49	48.44
KRH58221	Soybean	cytosol	15.37	19.38
KRH04318	Soybean	cytosol	13.81	18.93
KRG94011	Soybean	plastid	17.04	18.7
KRH36593	Soybean	plastid	14.25	18.47
KRH57615	Soybean	cytosol	14.92	18.41
KRH51188	Soybean	nucleus	13.81	18.1
KRH36591	Soybean	plastid	13.36	17.34
KRH01964	Soybean	nucleus	13.7	17.28
KRH11577	Soybean	plastid	13.14	17.08
KRH36594	Soybean	plastid	13.03	16.6
KRH11578	Soybean	plastid	15.92	13.86
KRH36592	Soybean	plastid	15.26	13.38
KRH11579	Soybean	plastid	14.92	13.19

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100819996	MapMan:35.1	EMBL:ACUP02002687	EnsemblPlantsGene:GLYMA_04G175400	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	UniProt:K7KKS7	EnsemblPlants:KRH63421	ProteinID:KRH63421
ProteinID:KRH63421.1	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS50828	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF268	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF160443	SUPFAM:SSF81901
InterPro:Smr_dom	InterPro:Smr_dom_sf	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002957E2E	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:43856145..43859630

Molecular Weight (calculated)

99272.6 Da

IEP (calculated)

8.470

GRAVY (calculated)

-0.280

Length

898 amino acids

Sequence
(BLAST)

001: MQWLVCCLFA STAESSQKNM LRAKQISSTL SSNARSILLG GSRCNAADGN SCTCPEDETC VSKRQQRKNN EDLLALKPPS LVSKATSQVV GTLVSGNLAN
101: GPASHKAGSV GQSGRVQQVQ PTSYAPSKSD SATSACVVDG VQDHVAHSSS LNADQFYRAG IAAVNFISDV VNYKLPLSDG MGILNYSKNY MVDPARALPK
201: IRSSNVQQIK KENFTAVHPK PPVPTHPGPS KHTNNHHGAK GKADKSNLAK GFKHVASSGT EKSGAAPNIP VNNHDRRALP QRTRTHSNHF VANFGSNMQS
301: SNPQMAGPFK ESFNKHTRDL NMPAGIVPTK RHFTNSGHVV EVVKDILKQL RWGPATEKTL YNLNFSIDAY QANQILKQLQ DHSVAVGFFC WLKRQPGFWH
401: DGHTYTTMVG ILGRAREFGA INKLLEQMVK DGCQPNVVTY NRLIHSYGRA NYLREALNVF NQMQEMGCEP DRVTYCTLID IHAKAGFLDV AMSMYERMQE
501: VGLSPDTFTY SVMINCLGKS GNLSAAHRLF CEMVDQGCVP NIVTYNILIA LQAKARNYQT ALELYRDMQN AGFKPDKVTY SIVMEVLGHC GYLEEAEAVF
601: FEMRQNHWVP DEPVYGLLVD LWGKAGNVEK AWEWYHTMLR AGLLPNVPTC NSLLSAFLRV HRLPDAYNLL QNMVTLGLNP SLQTYTLLLS CCTEAQSPYD
701: MGFCCELMAV SGHPAHAFLQ SMPAAGPDGQ NVRDHVSKFL DLMHSEDREG KRGLVDAVVD FLHKSGLKEE AGSVWEVAAQ KNVYPDAVKE KSTCYWLINL
801: HVMSDGTAVT ALSRTLAWFR RQMLASGVGP NRIDIVTGWG RRSRVTGSSL VRQAVQELLH VFSFPFFTEN SNSGCFVGCG EPLSQWLVHS YVERMHLL

Best Arabidopsis Sequence Match ( AT1G18900.1 )
(BLAST)

001: MIRAKHISNL SSTARSFFLN GSRTSVTDGN SCVYSDDENC VSKRQQLRKE AGQTEKRPSS ILPKPSVVGC ILPGEVTKPV VPKKVDDFGR PSLLPQHVSS
101: SPALPLKSHS VNYASTVVRE EVEGKASSEP IGDQIFKAGI VAVNFLSDLS NCKIPSYDGG SDAFGLPKSC MVDPTRPISS VKSSNVKAIR REHFAKIYPR
201: SAAKESSVGT TRNPSSNFRG AKEAERTGFV KGFRQVSNSV VGKSLPTTNN TYGKRTSVLQ RPHIDSNRFV PSGFSNSSVE MMKGPSGTAL TSRQYCNSGH
301: IVENVSSVLR RFRWGPAAEE ALQNLGLRID AYQANQVLKQ MNDYGNALGF FYWLKRQPGF KHDGHTYTTM VGNLGRAKQF GAINKLLDEM VRDGCQPNTV
401: TYNRLIHSYG RANYLNEAMN VFNQMQEAGC KPDRVTYCTL IDIHAKAGFL DIAMDMYQRM QAGGLSPDTF TYSVIINCLG KAGHLPAAHK LFCEMVDQGC
501: TPNLVTYNIM MDLHAKARNY QNALKLYRDM QNAGFEPDKV TYSIVMEVLG HCGYLEEAEA VFTEMQQKNW IPDEPVYGLL VDLWGKAGNV EKAWQWYQAM
601: LHAGLRPNVP TCNSLLSTFL RVNKIAEAYE LLQNMLALGL RPSLQTYTLL LSCCTDGRSK LDMGFCGQLM ASTGHPAHMF LLKMPAAGPD GENVRNHANN
701: FLDLMHSEDR ESKRGLVDAV VDFLHKSGQK EEAGSVWEVA AQKNVFPDAL REKSCSYWLI NLHVMSEGTA VTALSRTLAW FRKQMLASGT CPSRIDIVTG
801: WGRRSRVTGT SMVRQAVEEL LNIFGSPFFT ESGNSGCFVG SGEPLNRWLL QSHVERMHLL

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDY2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.