Factsheet for TraesCS5A01G004000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G012890.2	Barley	cytosol	49.12	96.3
TraesCSU01G073400.1	Wheat	mitochondrion	92.11	91.78
TraesCS5D01G012800.1	Wheat	mitochondrion	90.11	89.89
HORVU5Hr1G000760.8	Barley	mitochondrion	82.45	81.68
Os12t0638900-01	Rice	mitochondrion	79.62	78.7
EES17501	Sorghum	mitochondrion	76.68	76.32
Zm00001d031217_P003	Maize	mitochondrion	76.56	76.2
CDX68166	Canola	cytosol	44.41	72.36
CDX85855	Canola	cytosol	41.81	72.15
Bra003787.1-P	Field mustard	cytosol	41.34	71.34
CDX73110	Canola	cytosol	24.03	68.69
GSMUA_Achr8P15270_001	Banana	mitochondrion	57.24	57.72
CDY45392	Canola	mitochondrion	48.53	55.83
Bra015895.1-P	Field mustard	mitochondrion	48.53	55.83
AT1G74750.2	Thale cress	plastid	53.12	52.75
CDX83800	Canola	plastid	47.7	52.67
PGSC0003DMT400034282	Potato	mitochondrion	53.47	52.55
Bra016533.1-P	Field mustard	plastid	47.7	52.53
KRH54492	Soybean	mitochondrion	54.06	52.04
Bra025697.1-P	Field mustard	plastid	50.88	51.67
CDY19261	Canola	plastid	50.88	51.67
KRH63421	Soybean	plastid	54.3	51.34
VIT_17s0000g05510.t01	Wine grape	endoplasmic reticulum	53.36	50.45
CDX96689	Canola	plastid	47.11	50.25
CDY26713	Canola	plastid	50.29	49.71
AT1G18900.3	Thale cress	mitochondrion	51.71	49.55
Solyc03g113380.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	53.36	49.08
KRH56975	Soybean	mitochondrion	50.53	48.97
CDX73109	Canola	plastid	21.2	43.17
TraesCS4A01G319500.1	Wheat	plastid	15.78	18.93
TraesCS2A01G424400.1	Wheat	mitochondrion	16.84	18.43
TraesCS4A01G079200.1	Wheat	plastid	14.84	18.31

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002625
InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS50828
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF268	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF160443
SUPFAM:SSF48452	InterPro:Smr_dom	InterPro:Smr_dom_sf	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	EnsemblPlantsGene:TraesCS5A01G004000
EnsemblPlants:TraesCS5A01G004000.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:2867161..2869710

Molecular Weight (calculated)

93241.0 Da

IEP (calculated)

8.689

GRAVY (calculated)

-0.359

Length

849 amino acids

Sequence
(BLAST)

001: MLRAKQLSTL TQCARSFYLS GSRCGSADGA SCTCPDDDTC GSKRQTASAI ERRSSVKAQP LSAQHVAGSA AGYPAQAVNV IPSTSSPDKE PASSNRSNHP
101: GNRQVQGNNY VQPSKQAARG ISQSGIAGAG VYNELVNLKS SSNNGSTKQV PQAGASYSSK PLSAGQSSNN KANNQHSHAG ANTPSMQIDF GKGGSRSGYA
201: KPKQNFSGPA AAVSGSPSQI RNQRHPNQGH SNYHSNSSPN SDGRWAGVQT RNFSAPTVYS GPSDKSQGPL VGTIKGHGGG PQSNLRSLKS LRAVEQYYHT
301: LQQMKWGPMT EHVLDNLRCK IDAFQANQVL KLLHDHNIAL GFFHWLKRQP GFKHDGHTYT TMIGILGQAK QFGTMRKLLD EMSLVNCKPT VVTYNRIIHA
401: YGRANFLREA VKVFEEMEGA GYEPDRVTYC TLIDIHAKSG YLEVAMDLYG RMQEVGLSPD TFTYSAMVNC LGKGGQLAAA YKLFCEMIGN GCTPNLVTYN
501: IIIALQAKAR NYDNVVKLYK DMQIAGFRPD KITYSIVMEV LGHCGHLDEA EAVFLEMRRD WAPDEPVYGL LVDLWGKAGN VDKALGWYHA MLQDGLQPNV
601: PTCNSLLSAF LKLNRFQDAY SVLQNMLAQG LVPSLQTYTL LLSCCTDAHA QMGLCCQLMA ITGHPAHMFL LYLPDAEPGG ENVRDHARYF LDMMHSEDRE
701: SKRGIMDAVI DFLHKSGLKE EAGFIWEVAA QKNVYPDSVR EKSSSYWLIN LHLMSEGTAV TALSRTLAWF HRQMLLMDSC PERIDIVTGW GRRSRVTGSS
801: LVRQSIEKLL HLFQFPLFAA RGNTGCFVGC GEPLSQWLHN PYVERMHLL

Best Arabidopsis Sequence Match ( AT1G18900.1 )
(BLAST)

001: MIRAKHISNL SSTARSFFLN GSRTSVTDGN SCVYSDDENC VSKRQQLRKE AGQTEKRPSS ILPKPSVVGC ILPGEVTKPV VPKKVDDFGR PSLLPQHVSS
101: SPALPLKSHS VNYASTVVRE EVEGKASSEP IGDQIFKAGI VAVNFLSDLS NCKIPSYDGG SDAFGLPKSC MVDPTRPISS VKSSNVKAIR REHFAKIYPR
201: SAAKESSVGT TRNPSSNFRG AKEAERTGFV KGFRQVSNSV VGKSLPTTNN TYGKRTSVLQ RPHIDSNRFV PSGFSNSSVE MMKGPSGTAL TSRQYCNSGH
301: IVENVSSVLR RFRWGPAAEE ALQNLGLRID AYQANQVLKQ MNDYGNALGF FYWLKRQPGF KHDGHTYTTM VGNLGRAKQF GAINKLLDEM VRDGCQPNTV
401: TYNRLIHSYG RANYLNEAMN VFNQMQEAGC KPDRVTYCTL IDIHAKAGFL DIAMDMYQRM QAGGLSPDTF TYSVIINCLG KAGHLPAAHK LFCEMVDQGC
501: TPNLVTYNIM MDLHAKARNY QNALKLYRDM QNAGFEPDKV TYSIVMEVLG HCGYLEEAEA VFTEMQQKNW IPDEPVYGLL VDLWGKAGNV EKAWQWYQAM
601: LHAGLRPNVP TCNSLLSTFL RVNKIAEAYE LLQNMLALGL RPSLQTYTLL LSCCTDGRSK LDMGFCGQLM ASTGHPAHMF LLKMPAAGPD GENVRNHANN
701: FLDLMHSEDR ESKRGLVDAV VDFLHKSGQK EEAGSVWEVA AQKNVFPDAL REKSCSYWLI NLHVMSEGTA VTALSRTLAW FRKQMLASGT CPSRIDIVTG
801: WGRRSRVTGT SMVRQAVEEL LNIFGSPFFT ESGNSGCFVG SGEPLNRWLL QSHVERMHLL

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDY2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.