Factsheet for Bra025697.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26713	Canola	plastid	99.4	96.74
Bra003787.1-P	Field mustard	cytosol	50.84	86.38
HORVU0Hr1G012890.2	Barley	cytosol	37.8	72.98
AT1G18900.3	Thale cress	mitochondrion	73.09	68.96
Bra016533.1-P	Field mustard	plastid	63.52	68.87
Bra015895.1-P	Field mustard	mitochondrion	58.73	66.53
PGSC0003DMT400034282	Potato	mitochondrion	60.29	58.33
KRH54492	Soybean	mitochondrion	60.17	57.03
VIT_17s0000g05510.t01	Wine grape	endoplasmic reticulum	60.53	56.35
KRH63421	Soybean	plastid	59.57	55.46
Solyc03g113380.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	60.65	54.93
KRH56975	Soybean	mitochondrion	56.82	54.22
TraesCSU01G073400.1	Wheat	mitochondrion	52.39	51.41
TraesCS5D01G012800.1	Wheat	mitochondrion	52.27	51.35
GSMUA_Achr8P15270_001	Banana	mitochondrion	51.55	51.19
EES17501	Sorghum	mitochondrion	52.03	51.0
Zm00001d031217_P003	Maize	mitochondrion	52.03	51.0
TraesCS5A01G004000.1	Wheat	mitochondrion	51.67	50.88
HORVU5Hr1G000760.8	Barley	mitochondrion	52.03	50.76
Os12t0638900-01	Rice	mitochondrion	50.84	49.48
Bra003609.1-P	Field mustard	mitochondrion, plastid	18.54	18.79
Bra025013.1-P	Field mustard	plastid	15.19	17.86
Bra038453.1-P	Field mustard	plastid	14.59	17.5
Bra040576.1-P	Field mustard	plastid	14.35	17.37

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra025697	EnsemblPlants:Bra025697.1	EnsemblPlants:Bra025697.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4EA89
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF268	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF160443	InterPro:Smr_dom	InterPro:Smr_dom_sf
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000253F4CF	SEG:seg	:	:

Description

AT1G18900 (E=0.0) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA06:+:7360168..7362678

Molecular Weight (calculated)

93081.4 Da

IEP (calculated)

8.756

GRAVY (calculated)

-0.347

Length

836 amino acids

Sequence
(BLAST)

001: MMRPQQISKL SSSARSFFLS GSRSSAADGS PSAFNDDEPC VSRRQQLRHE AALAEKLPSS IIIRKPLVAG SILPGEAETK PAVLKKVDGS GRPSLLPQHV
101: CSSSSPALPS KPHSVTYASI REEEEEASSS APIGDQIFRA GYAAVSILSD LANFKLPSSD GGSSEVFGLG KSCMVDPARP ITSVKSVIRR EDLAKAYPRS
201: SAAKESSASK IRNSSSNFRG TKEGFKQVSA QKRYHHHTSG KRTTSMLQRH NNIDSNRFVP NEMMKAPSSR QYCNVKEVEN VSSILKTFRW GPAAEMALEN
301: LRLTMGPYQA NQVLKKMNDY GNALGFFYWL KRQPKFKHDE HTYTTMVGNL GRAKQFRAIN KLLDEMVRDG CRPNTVTYNR LIHSYGRANY LNEAMNVFNQ
401: MQEAGCEPDR VTYCTLIDIH AKAGFLDVAM DMHQRMEAAG ISTDTFTYSV IINCLGKAGH LPAAHKLFCE MVDQGCTPNL VTYNIMMDLH AKARNYQSAL
501: KLYRDMQNAG FRPDKVTYSI VMEVLGHCGY LEEAEGVFTE MRDNNWVPDE PVYGLLVDLW GKAGNVEKAW YWYQAMLHAG LLPNVPTCNS LLSTFLRVDK
601: IGEAYELLQN MLALGLRPSL QTYTLLLSCC TDGRSKLDMG YYGQLMASTG HPAHMFLLKM PSAGPDGQNV RNHVNSFLDL MHSEDRESKR GLVDAVVDFL
701: HKSGQKEEAG SVWEVAAQKN VFPDALREKS SSYWLINLHV MSEGTAVTAL SRTLAWFRRQ MLISGSCPSR IDIVTGWGRR SRVTGTSMVR QAVEELLNMF
801: GSPFFTESGN SGCFVGCGES LNRWLMQSYV ERMHLL

Best Arabidopsis Sequence Match ( AT1G18900.1 )
(BLAST)

001: MIRAKHISNL SSTARSFFLN GSRTSVTDGN SCVYSDDENC VSKRQQLRKE AGQTEKRPSS ILPKPSVVGC ILPGEVTKPV VPKKVDDFGR PSLLPQHVSS
101: SPALPLKSHS VNYASTVVRE EVEGKASSEP IGDQIFKAGI VAVNFLSDLS NCKIPSYDGG SDAFGLPKSC MVDPTRPISS VKSSNVKAIR REHFAKIYPR
201: SAAKESSVGT TRNPSSNFRG AKEAERTGFV KGFRQVSNSV VGKSLPTTNN TYGKRTSVLQ RPHIDSNRFV PSGFSNSSVE MMKGPSGTAL TSRQYCNSGH
301: IVENVSSVLR RFRWGPAAEE ALQNLGLRID AYQANQVLKQ MNDYGNALGF FYWLKRQPGF KHDGHTYTTM VGNLGRAKQF GAINKLLDEM VRDGCQPNTV
401: TYNRLIHSYG RANYLNEAMN VFNQMQEAGC KPDRVTYCTL IDIHAKAGFL DIAMDMYQRM QAGGLSPDTF TYSVIINCLG KAGHLPAAHK LFCEMVDQGC
501: TPNLVTYNIM MDLHAKARNY QNALKLYRDM QNAGFEPDKV TYSIVMEVLG HCGYLEEAEA VFTEMQQKNW IPDEPVYGLL VDLWGKAGNV EKAWQWYQAM
601: LHAGLRPNVP TCNSLLSTFL RVNKIAEAYE LLQNMLALGL RPSLQTYTLL LSCCTDGRSK LDMGFCGQLM ASTGHPAHMF LLKMPAAGPD GENVRNHANN
701: FLDLMHSEDR ESKRGLVDAV VDFLHKSGQK EEAGSVWEVA AQKNVFPDAL REKSCSYWLI NLHVMSEGTA VTALSRTLAW FRKQMLASGT CPSRIDIVTG
801: WGRRSRVTGT SMVRQAVEEL LNIFGSPFFT ESGNSGCFVG SGEPLNRWLL QSHVERMHLL

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDY2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.