Factsheet for Zm00001d031217_P003

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G012890.2	Barley	cytosol	45.02	88.68
EES17501	Sorghum	mitochondrion	86.52	86.52
Os12t0638900-01	Rice	mitochondrion	80.54	79.98
TraesCS5D01G012800.1	Wheat	mitochondrion	76.91	77.09
TraesCSU01G073400.1	Wheat	mitochondrion	76.55	76.64
TraesCS5A01G004000.1	Wheat	mitochondrion	76.2	76.56
CDX68166	Canola	cytosol	45.02	73.7
CDX85855	Canola	cytosol	42.32	73.37
HORVU5Hr1G000760.8	Barley	mitochondrion	73.51	73.16
Bra003787.1-P	Field mustard	cytosol	41.85	72.56
CDX73110	Canola	cytosol	24.03	69.02
GSMUA_Achr8P15270_001	Banana	mitochondrion	57.91	58.67
Bra015895.1-P	Field mustard	mitochondrion	49.0	56.64
CDY45392	Canola	mitochondrion	49.0	56.64
Bra016533.1-P	Field mustard	plastid	48.18	53.31
AT1G74750.2	Thale cress	plastid	53.34	53.22
CDX83800	Canola	plastid	47.71	52.93
PGSC0003DMT400034282	Potato	mitochondrion	53.58	52.89
Bra025697.1-P	Field mustard	plastid	51.0	52.03
CDY19261	Canola	plastid	50.64	51.67
KRH54492	Soybean	mitochondrion	53.34	51.59
AT1G18900.3	Thale cress	mitochondrion	53.11	51.13
CDX96689	Canola	plastid	47.6	51.01
KRH63421	Soybean	plastid	53.46	50.78
VIT_17s0000g05510.t01	Wine grape	endoplasmic reticulum	53.22	50.56
CDY26713	Canola	plastid	50.41	50.06
Solyc03g113380.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	53.81	49.73
KRH56975	Soybean	mitochondrion	50.41	49.09
CDX73109	Canola	plastid	21.57	44.12
Zm00001d034892_P001	Maize	plastid	16.18	19.27
Zm00001d028221_P001	Maize	plastid	15.12	18.67
Zm00001d025264_P001	Maize	mitochondrion, peroxisome	7.85	18.31
Zm00001d002345_P001	Maize	mitochondrion	16.53	17.92

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A1D6KGZ0	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	ProteinID:ONM02343.1	ProteinID:ONM02344.1	ProteinID:ONM02345.1
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF268	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF160443	SUPFAM:SSF48452	InterPro:Smr_dom
InterPro:Smr_dom_sf	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000221E8FF	EnsemblPlantsGene:Zm00001d031217	EnsemblPlants:Zm00001d031217_P003
EnsemblPlants:Zm00001d031217_T003	SEG:seg	:	:	:	:

Description

pentatricopeptide repeat*-GRMZM2G475897 pentatricopeptide repeat*-GRMZM2G475897

Coordinates

chr1:-:182484848..182492517

Molecular Weight (calculated)

94822.9 Da

IEP (calculated)

8.489

GRAVY (calculated)

-0.391

Length

853 amino acids

Sequence
(BLAST)

001: MLRAKQLSTL TQCARSFYLN GSRCGSTDGA SCTCPEDETY APKRQTASAI EQNSHSTHRT FVKIQPPLQD ATRATGHPVP AVHATTSTSG KEAASSNRSN
101: HPHSHHQIIR SDYVQPSKQT ARSISQSGIA GAGVYSELVN IRSSSNNGST DQAPQMGTNY SYQILSDNHS SNNRAQNQLN FPEGKMAYNP SVNNEFGKGY
201: PRAGYAKPKQ SFSGPSVMVS SSPSQIRSQG HPGLPPAKYH SNHFNSDARQ DDVQTRNPSG PNVFSGSGNK IQGSTGRVKA HSGGPQSNLR SLKLLRSVEQ
301: YYHTLQQMKW GPMTEHVLDN LHCKIDAFQA NQVLKLLHDH TVALGFFQWL KRQPGFKHDG HTYTTMIGIL GQARQFGVLK ELLDEMSRAH CKPTVVTYNR
401: IIHAYGRANY LKEAVKVFEE MQEAGYEPDR VTYCTLIDIH AKAGYLDIAM DLYGRMQEVG LSPDTFTYSV MVNCLGKGGQ LAAAYKLFCE MIENGCTPNL
501: VTYNIMIALQ AKARNYENVV KLYKDMQVAG FRPDKITYSI VMEVLGHCGH LDEAEAVFIE MRRDWAPDEP VYGLLVDLWG KAGNVDKALG WYQAMLQDGL
601: QPNVPTCNSL LSAFLKMNRF QDAYIVLQNM LARGLVPSVQ TYTLLLSCCT VGQAQMGLCC QLMAITGHPA HMFLLYLPDA EAGGQNVRDH TGYFLDMMHS
701: EDRESKRGLM DAVIDFLHKS GLKEEAGFIW EVAAQKNVYP DSVREKSSSY WLINLHLMSE GTAVTALSRT LAWFHRQVLT LGTGPERIDI VTGWGRRSRV
801: TGSSLVRQSI QKLLNLFESP FFTTRGNTGC FVGCGEPLNK WLHNPYVERM HLL

Best Arabidopsis Sequence Match ( AT1G18900.1 )
(BLAST)

001: MIRAKHISNL SSTARSFFLN GSRTSVTDGN SCVYSDDENC VSKRQQLRKE AGQTEKRPSS ILPKPSVVGC ILPGEVTKPV VPKKVDDFGR PSLLPQHVSS
101: SPALPLKSHS VNYASTVVRE EVEGKASSEP IGDQIFKAGI VAVNFLSDLS NCKIPSYDGG SDAFGLPKSC MVDPTRPISS VKSSNVKAIR REHFAKIYPR
201: SAAKESSVGT TRNPSSNFRG AKEAERTGFV KGFRQVSNSV VGKSLPTTNN TYGKRTSVLQ RPHIDSNRFV PSGFSNSSVE MMKGPSGTAL TSRQYCNSGH
301: IVENVSSVLR RFRWGPAAEE ALQNLGLRID AYQANQVLKQ MNDYGNALGF FYWLKRQPGF KHDGHTYTTM VGNLGRAKQF GAINKLLDEM VRDGCQPNTV
401: TYNRLIHSYG RANYLNEAMN VFNQMQEAGC KPDRVTYCTL IDIHAKAGFL DIAMDMYQRM QAGGLSPDTF TYSVIINCLG KAGHLPAAHK LFCEMVDQGC
501: TPNLVTYNIM MDLHAKARNY QNALKLYRDM QNAGFEPDKV TYSIVMEVLG HCGYLEEAEA VFTEMQQKNW IPDEPVYGLL VDLWGKAGNV EKAWQWYQAM
601: LHAGLRPNVP TCNSLLSTFL RVNKIAEAYE LLQNMLALGL RPSLQTYTLL LSCCTDGRSK LDMGFCGQLM ASTGHPAHMF LLKMPAAGPD GENVRNHANN
701: FLDLMHSEDR ESKRGLVDAV VDFLHKSGQK EEAGSVWEVA AQKNVFPDAL REKSCSYWLI NLHVMSEGTA VTALSRTLAW FRKQMLASGT CPSRIDIVTG
801: WGRRSRVTGT SMVRQAVEEL LNIFGSPFFT ESGNSGCFVG SGEPLNRWLL QSHVERMHLL

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDY2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.