CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016533.1-P	Field mustard	plastid	96.23	99.35
CDX85855	Canola	cytosol	50.75	82.11
CDX68166	Canola	cytosol	53.39	81.57
CDX83800	Canola	plastid	77.76	80.49
CDX73110	Canola	cytosol	28.77	77.1
HORVU0Hr1G012890.2	Barley	cytosol	37.31	68.59
CDY45392	Canola	mitochondrion	59.42	64.09
CDY19261	Canola	plastid	66.21	63.04
CDY26713	Canola	plastid	67.71	62.75
AT1G18900.3	Thale cress	mitochondrion	66.08	59.37
KRH54492	Soybean	mitochondrion	57.16	51.59
PGSC0003DMT400034282	Potato	mitochondrion	55.78	51.39
VIT_17s0000g05510.t01	Wine grape	endoplasmic reticulum	57.54	51.0
CDX73109	Canola	plastid	26.63	50.84
KRH63421	Soybean	plastid	56.78	50.33
KRH56975	Soybean	mitochondrion	54.65	49.66
GSMUA_Achr8P15270_001	Banana	mitochondrion	51.76	48.93
Solyc03g113380.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	55.9	48.21
Zm00001d031217_P003	Maize	mitochondrion	51.01	47.6
EES17501	Sorghum	mitochondrion	51.01	47.6
TraesCSU01G073400.1	Wheat	mitochondrion	50.63	47.3
TraesCS5D01G012800.1	Wheat	mitochondrion	50.5	47.24
TraesCS5A01G004000.1	Wheat	mitochondrion	50.25	47.11
HORVU5Hr1G000760.8	Barley	mitochondrion	50.5	46.91
Os12t0638900-01	Rice	mitochondrion	50.38	46.68
CDY42535	Canola	cytosol	14.57	21.05
CDY22765	Canola	cytosol	14.57	21.05
CDY33481	Canola	plastid	16.96	18.99
CDX67993	Canola	mitochondrion, plastid	19.47	18.9
CDY34461	Canola	plastid	16.46	18.71
CDY32239	Canola	plastid	16.46	18.71
CDX77673	Canola	plastid	16.58	18.57
CDX79321	Canola	mitochondrion, plastid	18.97	18.3

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlants:CDX96689	ProteinID:CDX96689	ProteinID:CDX96689.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00102903001	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF268	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF160443	InterPro:Smr_dom	InterPro:Smr_dom_sf
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EE3F3E	SEG:seg	:	:

Description

BnaA08g22320D

Coordinates

chrLK031895:-:590279..593257

Molecular Weight (calculated)

88207.0 Da

IEP (calculated)

9.430

GRAVY (calculated)

-0.285

Length

796 amino acids

Sequence
(BLAST)

001: MTPAKQISKL SSSARSFILN GSRLSAASGN SRAHTDDEPF VSRRQQLRNQ AAHTGKTQSS IVLNPSVVAS ILPGETSKKK VDDSARSSQS SSHSVSYASA
101: VIKEEEEASS APFGDQILRA GVKAVNILSD LANCKLPSFD RESEVSGLLP KAFMVDPTRP ITSVKSSNVK AKAYPGSSSK ESKTRNPCRS FQGSKEAARG
201: QHCNTRHVVE NVCSVLKSFR WGPAAEEALE KLRTEKRIVM SPRQANQVLM QMNDYGKALG FFYWLKRQPD FKHDDYTYTT MLGSLGRAKQ FGAINKLLNE
301: MVREGCQPTT VTYNRLIHSY GRANYLKEAM NVFNQMQKSG CEPDRVTYCT LIDIHAKAGF LDIAMDIHQR MNAAGIETDT FTYSLIINCL GKAGRLPAAH
401: KLFCEMVDKG CAPNLVTYNI MIDLHAKARN YQSALKLYRD MQSAGFKPDK VTYSIVMVVL GHCGYLEEAE GVFKKMEEEN WVPDEPVYGL LVDLWGKAGN
501: VEKAWRWYQE MLRAGVLPNV PTFNSLLSSF LRVNKVTEAS ELLQNMLALG LRPSLQTYTL LLSCCTDGRS KLDMGFCGQL MARTGHPAHT FLLKMPSAGP
601: DGQNVRNHAK SFLDLMHSED RESKRGLVDA VVDFLHKSGL KEEAGSVWEV AAQKNVFPDA LREKSRSYWL INLHVMSEGT AVTALARTLA WFRKQMLVSG
701: CGPARIDIVT GWGRRSRVTG SSMVRQAVEE LLSIFGSPFY TESGNSGCFV GCGEALNRWL LQSYLVSHKL RLGIDLKLLP SLVSSCNKLL NEVTKS

Best Arabidopsis Sequence Match ( AT1G18900.3 )
(BLAST)

001: MIRAKHISNL SSTARSFFLN GSRTSVTDGN SCVYSDDENC VSKRQQLRKE AGQTEKRPSS ILPKPSVVGC ILPGEVTKPV VPKKVDDFGR PSLLPQHVSS
101: SPALPLKSHS VNYASTVVRE EVEGKASSEP IGDQIFKAGI VAVNFLSDLS NCKIPSYDGG SDAFGLPKSC MVDPTRPISS VKSSNVKAIR REHFAKIYPR
201: SAAKESSVGT TRNPSSNFRG AKEAERTGFV KGFRQVSNSV VGKSLPTTNN TYGKRTSVLQ RPHIDSNRFV PSGFSNSSVE MMKGPSGTAL TSRQYCNSGH
301: IVENVSSVLR RFRWGPAAEE ALQNLGLRID AYQANQVLKQ MNDYGNALGF FYWLKRQPGF KHDGHTYTTM VGNLGRAKQF GAINKLLDEM VRDGCQPNTV
401: TYNRLIHSYG RANYLNEAMN VFNQMQEAGC KPDRVTYCTL IDIHAKAGFL DIAMDMYQRM QAGGLSPDTF TYSVIINCLG KAGHLPAAHK LFCEMVDQGC
501: TPNLVTYNIM MDLHAKARNY QNALKLYRDM QNAGFEPDKV TYSIVMEVLG HCGYLEEAEA VFTEMQQKNW IPDEPVYGLL VDLWGKAGNV EKAWQWYQAM
601: LHAGLRPNVP TCNSLLSTFL RVNKIAEAYE LLQNMLALGL RPSLQTYTLL LSCCTDGRSK LDMGFCGQLM ASTGHPAHMF LLKMPAAGPD GENVRNHANN
701: FLDLMHSEDR ESKRGLVDAV VDFLHKSGQK EEAGSVWEVA AQKNVFPDAL REKSCSYWLI NLHVMSEGTA VTALSRTLAW FRKQMLASGT CPSRIDIVTG
801: WGRRSRVTGT SMVRQAVEEL LNIFGSPFFT ESGNSGCFVG SGEPLNRWLL QSHLVSHKLR LELDRMECLS SLLSSASQLY LPLVII

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDY2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.