CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025013.1-P	Field mustard	plastid	98.17	98.17
CDY33481	Canola	plastid	98.03	98.03
AT5G46580.1	Thale cress	plastid	83.69	83.69
Solyc08g077140.1.1	Tomato	nucleus	25.32	66.67
VIT_02s0012g01090.t01	Wine grape	plastid	66.81	65.7
PGSC0003DMT400085913	Potato	plastid	65.26	65.26
PGSC0003DMT400045128	Potato	plastid	65.26	65.26
KRH58221	Soybean	cytosol	63.29	63.2
KRH04318	Soybean	cytosol	55.27	60.0
GSMUA_Achr11P...	Banana	plastid	51.76	55.01
Os03t0856100-01	Rice	plastid	42.9	47.66
EER93066	Sorghum	plastid	48.24	47.51
Zm00001d034892_P001	Maize	plastid	46.84	46.51
TraesCS5B01G559600.1	Wheat	plastid	45.85	45.79
TraesCS4A01G319500.1	Wheat	plastid	45.57	45.76
HORVU5Hr1G124070.6	Barley	plastid	45.85	44.97
TraesCS5D01G565800.1	Wheat	mitochondrion, plastid	44.73	42.91
CDY42535	Canola	cytosol	30.66	39.56
CDY22765	Canola	cytosol	30.52	39.38
CDY34461	Canola	plastid	33.9	34.43
CDY32239	Canola	plastid	33.19	33.71
CDX85855	Canola	cytosol	14.91	21.54
CDX68166	Canola	cytosol	15.61	21.31
CDX73110	Canola	cytosol	8.16	19.53
CDY45392	Canola	mitochondrion	18.57	17.89
CDX83800	Canola	plastid	18.14	16.77
CDX67993	Canola	mitochondrion, plastid	19.13	16.59
CDX96689	Canola	plastid	18.57	16.58
CDX79321	Canola	mitochondrion, plastid	19.13	16.48
CDY19261	Canola	plastid	17.86	15.19
CDY26713	Canola	plastid	18.28	15.13
CDX73109	Canola	plastid	8.16	13.91

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlants:CDX77673	ProteinID:CDX77673	ProteinID:CDX77673.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00128631001	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF13041	PFAM:PF13812	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF357
InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF48452	InterPro:Smr_dom	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0004EF1B95	SEG:seg	:	:	:	:

Description

BnaC07g19270D

Coordinates

chrLK031812:-:705114..707381

Molecular Weight (calculated)

80031.7 Da

IEP (calculated)

7.712

GRAVY (calculated)

-0.253

Length

711 amino acids

Sequence
(BLAST)

001: MATVLSTSVD VCFNPQYSDT KKHSLFSKPS SLRQSRTRKL NISCSSTKQP KTLEEEPVTK TPSLSEQLKP LSATTLRQEQ QTHVLSKPKS VWVNPTRPKR
101: SVLSLQRQKR SAYSYNPQIK DLRAFAQKLN SSGFTEKSEF LALLDEIPHP PDRDNSLLVL NSLREWQKTH IFFDWVKAKN LFPMETIFYN VAMKSLRFGR
201: QFQLIEAMAL EMVEDGVELD NITYSTIITC AKRCNLYDKA IEWFERMYKT GLMPDEVTYS AILDVYSKSG KVEEVLSLYE RAVATGWKPD AIAFSVLGKM
301: FGEAGDYDGI RYVLQEMKSM DVKPNVVVYN TLLEAMGRAG KPGLARSLFN EMLVSGLAPN EKTLTALVKI YGKARWAKDA LQLWEEMKAK KWPMDFILYN
401: TLLNMCADIG LEEEAERLFD DMKESGGCKP DSFSYTAMLN IYGSGGKAEK AMKLFEEMLE AGVQVNVMGC TCLVQCLGKA KRIDDLVSVF ETSVQRGVKP
501: DDRLCGCLLS VMALCESGED AEKVMGCLGR ANQKLVAFVK LVIDEKTEFE TVKEEFKLVI NGTQVEARRP FCNCLIDICR GKKQQERAHE LLYLGTLFGL
601: YPGLHNKTVK EWSLDVRSLS VGAAETALEE WMRTLANIVK RQEDLPEVFL AQTGTGTHRF SQGLANSFAS HLEQLAAPFK PSDRAGVFVA TKEDLVSWLE
701: SKFPPLVASQ A

Best Arabidopsis Sequence Match ( AT5G46580.1 )
(BLAST)

001: MATVLTTAID VCFNPQNSDT KKHSLFLKPS LFRQSRSRKL NISCSSLKQP KTLEEEPITT KTPSLSEQLK PLSATTLRQE QTQILSKPKS VWVNPTRPKR
101: SVLSLQRQKR SAYSYNPQIK DLRAFALKLN SSIFTEKSEF LSLLDEIPHP PNRDNALLVL NSLREWQKTH TFFNWVKSKS LFPMETIFYN VTMKSLRFGR
201: QFQLIEEMAL EMVKDGVELD NITYSTIITC AKRCNLYNKA IEWFERMYKT GLMPDEVTYS AILDVYSKSG KVEEVLSLYE RAVATGWKPD AIAFSVLGKM
301: FGEAGDYDGI RYVLQEMKSM DVKPNVVVYN TLLEAMGRAG KPGLARSLFN EMLEAGLTPN EKTLTALVKI YGKARWARDA LQLWEEMKAK KWPMDFILYN
401: TLLNMCADIG LEEEAERLFN DMKESVQCRP DNFSYTAMLN IYGSGGKAEK AMELFEEMLK AGVQVNVMGC TCLVQCLGKA KRIDDVVYVF DLSIKRGVKP
501: DDRLCGCLLS VMALCESSED AEKVMACLER ANKKLVTFVN LIVDEKTEYE TVKEEFKLVI NATQVEARRP FCNCLIDICR GNNRHERAHE LLYLGTLFGL
601: YPGLHNKTIK EWSLDVRSLS VGAAETALEE WMRTLANIIK RQEELPELFL AQTGTGTHRF SQGLANSFAL HLQQLSAPFR QSDRPGIFVA TKEDLVSWLE
701: SKFPPLVTSQ A

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS25]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.