CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034892_P001	Maize	plastid	85.73	86.45
Os03t0856100-01	Rice	plastid	66.07	74.53
TraesCS4A01G319500.1	Wheat	plastid	72.44	73.87
TraesCS5B01G559600.1	Wheat	plastid	72.3	73.31
HORVU5Hr1G124070.6	Barley	plastid	71.47	71.17
TraesCS5D01G565800.1	Wheat	mitochondrion, plastid	71.61	69.77
GSMUA_Achr11P...	Banana	plastid	49.17	53.06
PGSC0003DMT400085913	Potato	plastid	47.65	48.38
PGSC0003DMT400045128	Potato	plastid	47.65	48.38
VIT_02s0012g01090.t01	Wine grape	plastid	48.34	48.27
CDX77673	Canola	plastid	47.51	48.24
CDY33481	Canola	plastid	47.23	47.96
Bra025013.1-P	Field mustard	plastid	47.09	47.82
Solyc08g077140.1.1	Tomato	nucleus	17.87	47.78
AT5G46580.1	Thale cress	plastid	46.12	46.84
KRH58221	Soybean	cytosol	45.71	46.35
KRH04318	Soybean	cytosol	39.89	43.97
EER92639	Sorghum	plastid	30.61	31.98
KXG27099	Sorghum	mitochondrion	19.39	17.74
EES17501	Sorghum	mitochondrion	18.98	16.06

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8060693	UniProt:C5WRY5	EnsemblPlants:EER93066	ProteinID:EER93066
ProteinID:EER93066.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002625
InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS50828
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF357	InterPro:Pentatricopeptide_repeat	SMART:SM00463	EnsemblPlantsGene:SORBI_3001G006000
SUPFAM:SSF81901	unigene:Sbi.255	InterPro:Smr_dom	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A827BB
RefSeq:XP_002466068.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:565503..568068

Molecular Weight (calculated)

79303.0 Da

IEP (calculated)

7.289

GRAVY (calculated)

-0.175

Length

722 amino acids

Sequence
(BLAST)

001: MAPPTAASAS ASAFLFLSPP RSRSRYQHPK TKPKHTATIL CSSSAATATG SASPSLSEQL EPLSRTLLHD KPTPIADRPT PEPTWVNPTR PKPSVLSLSR
101: HRRRSPSANA SSAPLQPLLR ALRALPEDAD LAATLDAFFL QQGGQGQGQG QGAAPSPSDA LLLLNYLHPS WRKTLSLLAW LRALPAGAFQ LDTIFFNVAL
201: KSLRAARQWP HAERLALDML DAGVPLDNIT YSTLITAARR CRQFAKAVEW FERMYAADGV LPDEVTYSAV LDVYAQLGMK EEVLALFDRA RGSGWKPDHV
301: AFAVLAKMFG EAGDYEGIQF VFKEMTEVGI KPNIFVYNAL LEALGKTGKP GLARNLFEEM VEQGVDPNAR TLTALAKIYG RARWGRDALQ LWDKMRELKL
401: PADNILCNTL LSMCADVGLV NEAEQLFNEM KDPECRDVPK PDKWSYTAMI NIYGSNGDTD RALQLFGEML KGGIEPNIMS YTIVIQCLGK AQRIQQAVEV
501: LEAGLEKGLK PDDRLCGCLL SVIALSSGEE MEIVLSSLQK FNQNLVKLIR VLSDAQVGAD DITKELKSVL NAAAPEVRRP YCNCLIDVCR NHGFPPQRAR
601: EVFHLAQTYG LYTKLQSRKD EEWSLDLRSL SVGAAKTAFD DWMQTVSERW VQQKALPESF SVYTGSSTHK FAQGLASAFA AHLEQMAVPF HASESQAGSF
701: ISSRDDLVSW LQMSSSSAVV AG

Best Arabidopsis Sequence Match ( AT5G46580.1 )
(BLAST)

001: MATVLTTAID VCFNPQNSDT KKHSLFLKPS LFRQSRSRKL NISCSSLKQP KTLEEEPITT KTPSLSEQLK PLSATTLRQE QTQILSKPKS VWVNPTRPKR
101: SVLSLQRQKR SAYSYNPQIK DLRAFALKLN SSIFTEKSEF LSLLDEIPHP PNRDNALLVL NSLREWQKTH TFFNWVKSKS LFPMETIFYN VTMKSLRFGR
201: QFQLIEEMAL EMVKDGVELD NITYSTIITC AKRCNLYNKA IEWFERMYKT GLMPDEVTYS AILDVYSKSG KVEEVLSLYE RAVATGWKPD AIAFSVLGKM
301: FGEAGDYDGI RYVLQEMKSM DVKPNVVVYN TLLEAMGRAG KPGLARSLFN EMLEAGLTPN EKTLTALVKI YGKARWARDA LQLWEEMKAK KWPMDFILYN
401: TLLNMCADIG LEEEAERLFN DMKESVQCRP DNFSYTAMLN IYGSGGKAEK AMELFEEMLK AGVQVNVMGC TCLVQCLGKA KRIDDVVYVF DLSIKRGVKP
501: DDRLCGCLLS VMALCESSED AEKVMACLER ANKKLVTFVN LIVDEKTEYE TVKEEFKLVI NATQVEARRP FCNCLIDICR GNNRHERAHE LLYLGTLFGL
601: YPGLHNKTIK EWSLDVRSLS VGAAETALEE WMRTLANIIK RQEELPELFL AQTGTGTHRF SQGLANSFAL HLQQLSAPFR QSDRPGIFVA TKEDLVSWLE
701: SKFPPLVTSQ A

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS25]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.