CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002345_P001	Maize	mitochondrion	91.76	91.99
Os04t0612800-01	Rice	mitochondrion	87.33	87.99
TraesCS2D01G422200.1	Wheat	mitochondrion	83.52	84.92
TraesCS2A01G424400.1	Wheat	mitochondrion	82.0	83.38
TraesCS2B01G444000.1	Wheat	plastid	83.65	81.48
HORVU2Hr1G099330.11	Barley	mitochondrion	71.48	72.68
GSMUA_Achr11P...	Banana	mitochondrion	57.79	61.04
KRH57615	Soybean	cytosol	54.63	59.2
VIT_12s0028g00090.t01	Wine grape	plastid	56.65	55.74
Solyc08g078150.1.1	Tomato	nucleus	55.51	55.16
PGSC0003DMT400067470	Potato	mitochondrion	55.39	55.04
KRG94011	Soybean	plastid	55.89	53.91
Bra003609.1-P	Field mustard	mitochondrion, plastid	55.64	53.21
CDX79321	Canola	mitochondrion, plastid	55.51	53.09
AT1G79490.1	Thale cress	mitochondrion, plastid	55.13	52.03
CDX67993	Canola	mitochondrion, plastid	53.99	51.95
EER93066	Sorghum	plastid	17.74	19.39
EER92639	Sorghum	plastid	15.46	17.66
EES17501	Sorghum	mitochondrion	18.12	16.76

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A1B6PN57	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	InterPro:IPR002625
InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KXG27099	ProteinID:KXG27099	ProteinID:KXG27099.1	PFAM:PF01535
PFAM:PF17177	InterPro:PPR_long	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF326
InterPro:Pentatricopeptide_repeat	SMART:SM00463	EnsemblPlantsGene:SORBI_3006G212000	InterPro:Smr_dom	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI00081ADC00	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:56113901..56116270

Molecular Weight (calculated)

85593.8 Da

IEP (calculated)

9.278

GRAVY (calculated)

0.192

Length

789 amino acids

Sequence
(BLAST)

001: MLLRVGLARS ARLRGGGGGG GVSLSLSLPL ARGLSFEPPP PPPPPDPEWT DTVEYLDESG ALLSSARGAR PAVPGADPTI LSGASAHPLP RPAAAARLAV
101: LVLRHRSGAP LSAALSALPS APDPALLLLA ASSLPASDPV PLISLVAWAR LQPWFVPSDD LSSLLASRLP PATHSSELLA LFDDTLGLPD LAAFPKTFNA
201: VVSALATHGL LEPAFYCFKR LRDASFRGLE TPAYNALLSL LLARGLAFKA FEVLDEMATS GCALDESTYE LAVPALARAG RIDAARKMFD EMKQREGIGR
301: APVGVYSVMV DVLAKAGRLD AAMGMYREMV AVGHRVSTAV STAMVEALVR SGKLDAGMEL WEEMRRGGLR PSFGLYTMVV EANARSGRLD MAAKLFGDME
401: KSGFFPTPAT YACLVEMHAS AGQVDAAMRL YHSMANAGTR PGLSTFTALL TMLANKRLLD LAAKVLLEMK ASGFPIEVTA SDLLMIYIKD GSTDLALRWL
501: RFMGSAGIRT NNFIIRQLFE SCMKTGLYDS ARPLLEAYVA GAAKVDLILY TSILAHLVRC QDESSERAIM DILCASKHKA HDFMCGLFTG PEQRKQPVLS
601: FVREFFQGID YDNEESAARY FVNVLLNYLV LMGQMNRARC VWKVAYENKL FAKAIVFDQH IAWSLDVRSL SVGAALVATV HTLHRFRKRM LYYGVVPRRI
701: KLVTGPTLKM VVAQVLASLE SPFEVSKVVL RAPGDSVLEW FKKPIVQQFL LNEIPSKADV LMHRLNVMFP SSAPEVRSLS IPRSLGMSR

Best Arabidopsis Sequence Match ( AT1G79490.1 )
(BLAST)

001: MIRGRTAKVI PRNVIFTLSR SSISESPLIS PSRINPKLAG SFSFNIRLLS YFTVRNGFCP DCSVPRDPNF VGLTTQCRSI VRRFCSEKIG SSESSGWTEE
101: VEYLDESGSV LHSGKGIRSV EPGLDDHVMV GGLKKPYMNA SSVAKIVEVV QRWKWGPELE TQLDKLQFVP NMVHITQSLK IVKEVDAALS LFRWAKKQPW
201: YLPSDECYVV LFDGLNQGRD FVGIQSLFEE MVQDSSSHGD LSFNAYNQVI QYLAKAEKLE VAFCCFKKAQ ESGCKIDTQT YNNLMMLFLN KGLPYKAFEI
301: YESMEKTDSL LDGSTYELII PSLAKSGRLD AAFKLFQQMK ERKLRPSFSV FSSLVDSMGK AGRLDTSMKV YMEMQGFGHR PSATMFVSLI DSYAKAGKLD
401: TALRLWDEMK KSGFRPNFGL YTMIIESHAK SGKLEVAMTV FKDMEKAGFL PTPSTYSCLL EMHAGSGQVD SAMKIYNSMT NAGLRPGLSS YISLLTLLAN
501: KRLVDVAGKI LLEMKAMGYS VDVCASDVLM IYIKDASVDL ALKWLRFMGS SGIKTNNFII RQLFESCMKN GLYDSARPLL ETLVHSAGKV DLVLYTSILA
601: HLVRCQDEDK ERQLMSILSA TKHKAHAFMC GLFTGPEQRK QPVLTFVREF YQGIDYELEE GAARYFVNVL LNYLVLMGQI NRARCVWKVA YENKLFPKAI
701: VFDQHIAWSL DVRNLSVGAA LIAVVHTLHR FRKRMLYYGV VPRRIKLVTG PTLKIVIAQM LSSVESPFEV SKVVLRAPGE LVMEWFKKPI VQQFLLNEIP
801: SRSDILMHKM NVMFPSSAPE LRSMSPPKPL MSSKAF

Arabidopsis Description

EMB2217Pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAK0]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.