CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028221_P001	Maize	plastid	92.33	92.33
TraesCS4A01G079200.1	Wheat	plastid	74.82	75.15
TraesCS4D01G244400.1	Wheat	plastid	73.95	74.27
Os03t0215900-00	Rice	plastid	72.07	73.67
TraesCS4B01G245000.1	Wheat	plastid	73.37	73.58
HORVU2Hr1G122510.2	Barley	cytosol	37.92	68.77
HORVU4Hr1G067600.1	Barley	nucleus	68.6	67.81
Zm00001d025264_P001	Maize	mitochondrion, peroxisome	35.6	67.21
Solyc09g042290.1.1	Tomato	cytosol	33.29	56.37
CDY42535	Canola	cytosol	44.28	55.54
CDY22765	Canola	cytosol	44.14	55.35
VIT_00s0194g00310.t01	Wine grape	cytosol, extracellular	17.08	53.39
GSMUA_Achr7P26730_001	Banana	plastid	41.68	50.7
VIT_00s0194g00270.t01	Wine grape	plastid	51.23	50.5
KRH51188	Soybean	nucleus	49.78	50.22
Solyc11g012670.1.1	Tomato	nucleus	49.64	49.78
CDY34461	Canola	plastid	49.93	49.29
PGSC0003DMT400034773	Potato	plastid	48.91	49.06
KRH01964	Soybean	nucleus	50.51	49.02
Bra040576.1-P	Field mustard	plastid	48.48	48.48
Bra038453.1-P	Field mustard	plastid	48.63	48.21
CDY32239	Canola	plastid	48.77	48.14
KRH36593	Soybean	plastid	47.32	47.19
AT4G16390.1	Thale cress	plastid	47.18	46.44
KRH36594	Soybean	plastid	44.72	43.83
KRH36591	Soybean	plastid	43.85	43.79
KRH11577	Soybean	plastid	42.84	42.84
KRH11579	Soybean	plastid	45.01	30.61
EER93066	Sorghum	plastid	31.98	30.61
KRH36592	Soybean	plastid	42.98	29.0
KRH11578	Soybean	plastid	42.98	28.78
KXG27099	Sorghum	mitochondrion	17.66	15.46
EES17501	Sorghum	mitochondrion	18.38	14.89

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8056885	UniProt:C5WSS0	EnsemblPlants:EER92639	ProteinID:EER92639
ProteinID:EER92639.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009451	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009658
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0019538	GO:GO:0031425	GO:GO:0045727
GO:GO:0090305	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFAM:PF13812	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF437
InterPro:Pentatricopeptide_repeat	SMART:SM00463	EnsemblPlantsGene:SORBI_3001G455500	unigene:Sbi.17672	InterPro:Smr_dom	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A82813	RefSeq:XP_002465641.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:73153499..73155928

Molecular Weight (calculated)

75386.4 Da

IEP (calculated)

6.326

GRAVY (calculated)

-0.076

Length

691 amino acids

Sequence
(BLAST)

001: MASLPLCRSP SSLVPSWPHR PIPASFNPKN PSSPVAAHVS VQDTPPQPQD PAPPSDSSPN GTKPSSNTTR FLWVNPNSPR AADVARARAG SGRRARLSSA
101: AAALGACEPA EAAVEAALEA AFPEPPSEQD AVIVLNTAAA ARPETALLAL RWFLGNAKVR KKVILYNVVL NLLRKKRHWS ETEALWAEML RDGVQPDNAT
201: FSTVISCARA CGLHSKAVEW FDKMPEFGCS PDMLTYSAVI DAYGRAGNSE AALRLYDRAR AEKWQLDPVI CSTVIKVHSI SGNFDGALNV FEEMKATGVK
301: PNLVVYNTML DAMGRALRPW VVKTIHREMV DQQVQPSRAT YCCLLHAYTR ARYGEDAMAV YRLMKDEAMD IDVMLYNMLL SMCADIGYVD EAEEIFRDMK
401: ASMDACSKPD SWSYSSMVTL YSSTANVLGA EGILNEMVEA GFKPNIFVLT SLIRCYGKVG RTDDVVKSFG MLQDLCIIPD DRFCGCLLSV AANTPVEELG
501: KVISCIETSN AQLGAVVKLL VDRSSSPESF REAASELLGC SRGVVKMPYC NCLMDLCVNL NQMEKACALL DAAQQLSIYA NIQTRTQTQW SLHLRGLSVG
601: AALTTLHVWM NDLYTSLQTG NEGLPPLLGI HTGQGKNTYS DRGLAAMFEA HLKELDAPFH EAPDKAGWFL TTSVAAKHWL ETKAASELVT V

Best Arabidopsis Sequence Match ( AT4G16390.1 )
(BLAST)

001: MSFHHLCSSP SSLLHDPLPL CNLLSVYPKS TPRSFLSSYN PNSSHFHSRN LLQATHVSVQ EAIPQSEKSK LVDVDLPIPE PTASKSYVWV NPKSPRASQL
101: RRKSYDSRYS SLIKLAESLD ACKPNEADVC DVITGFGGKL FEQDAVVTLN NMTNPETAPL VLNNLLETMK PSREVILYNV TMKVFRKSKD LEKSEKLFDE
201: MLERGIKPDN ATFTTIISCA RQNGVPKRAV EWFEKMSSFG CEPDNVTMAA MIDAYGRAGN VDMALSLYDR ARTEKWRIDA VTFSTLIRIY GVSGNYDGCL
301: NIYEEMKALG VKPNLVIYNR LIDSMGRAKR PWQAKIIYKD LITNGFTPNW STYAALVRAY GRARYGDDAL AIYREMKEKG LSLTVILYNT LLSMCADNRY
401: VDEAFEIFQD MKNCETCDPD SWTFSSLITV YACSGRVSEA EAALLQMREA GFEPTLFVLT SVIQCYGKAK QVDDVVRTFD QVLELGITPD DRFCGCLLNV
501: MTQTPSEEIG KLIGCVEKAK PKLGQVVKML VEEQNCEEGV FKKEASELID SIGSDVKKAY LNCLIDLCVN LNKLERACEI LQLGLEYDIY TGLQSKSATQ
601: WSLHLKSLSL GAALTALHVW MNDLSEAALE SGEEFPPLLG INTGHGKHKY SDKGLAAVFE SHLKELNAPF HEAPDKVGWF LTTSVAAKAW LESRRSAGGV
701: SA

Arabidopsis Description

P67Pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.