Factsheet for VIT_00s0194g00270.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0194g00310.t01	Wine grape	cytosol, extracellular	30.24	95.93
Solyc09g042290.1.1	Tomato	cytosol	42.65	73.28
CDY22765	Canola	cytosol	56.35	71.69
CDY42535	Canola	cytosol	56.06	71.32
AT4G16390.1	Thale cress	plastid	69.04	68.95
PGSC0003DMT400034773	Potato	plastid	67.62	68.8
Solyc11g012670.1.1	Tomato	nucleus	67.62	68.8
Bra038453.1-P	Field mustard	plastid	68.19	68.58
KRH51188	Soybean	nucleus	66.9	68.47
CDY32239	Canola	plastid	68.05	68.14
Bra040576.1-P	Field mustard	plastid	66.62	67.58
KRH01964	Soybean	nucleus	66.9	65.87
CDY34461	Canola	plastid	65.19	65.29
GSMUA_Achr7P26730_001	Banana	plastid	48.5	59.86
KRH36593	Soybean	plastid	58.63	59.31
KRH36594	Soybean	plastid	57.2	56.88
KRH36591	Soybean	plastid	56.06	56.79
KRH11577	Soybean	plastid	55.49	56.3
HORVU2Hr1G122510.2	Barley	cytosol	29.24	53.81
Os03t0215900-00	Rice	plastid	50.64	52.51
TraesCS4D01G244400.1	Wheat	plastid	50.5	51.45
TraesCS4B01G245000.1	Wheat	plastid	50.36	51.23
EER92639	Sorghum	plastid	50.5	51.23
TraesCS4A01G079200.1	Wheat	plastid	50.21	51.16
Zm00001d028221_P001	Maize	plastid	50.36	51.09
HORVU4Hr1G067600.1	Barley	nucleus	48.5	48.64
Zm00001d025264_P001	Maize	mitochondrion, peroxisome	20.97	40.16
KRH11579	Soybean	plastid	52.78	36.42
VIT_02s0012g01090.t01	Wine grape	plastid	36.66	35.55
KRH36592	Soybean	plastid	50.5	34.57
KRH11578	Soybean	plastid	50.78	34.5
VIT_12s0028g00090.t01	Wine grape	plastid	17.4	15.21
VIT_17s0000g05510.t01	Wine grape	endoplasmic reticulum	19.12	14.92

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100259703	wikigene:100259703	MapMan:35.1	EMBL:AM446122	ProteinID:CAN63129
ProteinID:CAN63129.1	ProteinID:CCB50058	ProteinID:CCB50058.1	UniProt:F6HCW3	EMBL:FN595527	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016787	GO:GO:0031425	GO:GO:0090305	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990
EntrezGene:LOC100259703	wikigene:LOC100259703	PFAM:PF01535	PFAM:PF13041	PFAM:PF17177	InterPro:PPR_long
PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF437	InterPro:Pentatricopeptide_repeat	SMART:SM00463
SUPFAM:SSF48452	SUPFAM:SSF81901	InterPro:Smr_dom	TIGR:TC59763	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI00015CD8F0	ArrayExpress:VIT_00s0194g00270	EnsemblPlantsGene:VIT_00s0194g00270	EnsemblPlants:VIT_00s0194g00270.t01	unigene:Vvi.11863	RefSeq:XP_002269600
RefSeq:XP_002269600.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:10731146..10733471

Molecular Weight (calculated)

78786.4 Da

IEP (calculated)

6.356

GRAVY (calculated)

-0.232

Length

701 amino acids

Sequence
(BLAST)

001: MAYHLCSSPS SLCHDHHYLH NSLSFSRKSR LRSFNSFSFK PNSLSLHSRT FLQITHVSLE DPIPQETQKA DASNPPNSQD PDRKTKSYIW VNPRSPRASK
101: LRQHSYDARY ASLVKIAESL DSCEATEEDV SQVLRCLGDK ILEQDAVIVL NNMTNPETAL LAFGFFRKRL KPSREVILYN VTLKVFRKCR NLDRAEKLFD
201: EMLERGVKPD NITFSTIISC ARVSSLPNKA VEWFEKMPEF GCHPDDVTYS AMIDAYGRAG NVDMALKLYD RARTEKWRID PVTFSTLIRI YGMSGNFDGC
301: LNVYEEMKAL GVKPNLVIYN TLLDAMGRAK RPWQAKNIYK EMTNNGLQPS WGTYAALLRA YGRARYAEDA LIVYKEMKEK GLELSVVLYN TLLAMCADVG
401: YTEEAAAIFE DMKSSGNCMP DSWTFSSLIT IYSCSGKVSE AEAMLNAMLE AGFEPNIFVL TSLIQCYGKA NRTDEVVRTF DRLLELDITP DDRFCGCMLN
501: VMTQSPKEEL GKLIDCIDKA NPKLGNVVKL LLEEQNGEGT FRKEASELFD SISADVKKAY CNCLIDLCVN LNLLEKACEL FDLGLTLEIY IDIQSKSPTQ
601: WSLHLKSLSL GAALTALHIW MNDLSKAVEV GEELPAVLGI NTGHGKHKYS DKGLASVFES HLKELNAPFH EAPDKVGWFL TTKVAATSWL ESRSAPELVA
701: V

Best Arabidopsis Sequence Match ( AT4G16390.1 )
(BLAST)

001: MSFHHLCSSP SSLLHDPLPL CNLLSVYPKS TPRSFLSSYN PNSSHFHSRN LLQATHVSVQ EAIPQSEKSK LVDVDLPIPE PTASKSYVWV NPKSPRASQL
101: RRKSYDSRYS SLIKLAESLD ACKPNEADVC DVITGFGGKL FEQDAVVTLN NMTNPETAPL VLNNLLETMK PSREVILYNV TMKVFRKSKD LEKSEKLFDE
201: MLERGIKPDN ATFTTIISCA RQNGVPKRAV EWFEKMSSFG CEPDNVTMAA MIDAYGRAGN VDMALSLYDR ARTEKWRIDA VTFSTLIRIY GVSGNYDGCL
301: NIYEEMKALG VKPNLVIYNR LIDSMGRAKR PWQAKIIYKD LITNGFTPNW STYAALVRAY GRARYGDDAL AIYREMKEKG LSLTVILYNT LLSMCADNRY
401: VDEAFEIFQD MKNCETCDPD SWTFSSLITV YACSGRVSEA EAALLQMREA GFEPTLFVLT SVIQCYGKAK QVDDVVRTFD QVLELGITPD DRFCGCLLNV
501: MTQTPSEEIG KLIGCVEKAK PKLGQVVKML VEEQNCEEGV FKKEASELID SIGSDVKKAY LNCLIDLCVN LNKLERACEI LQLGLEYDIY TGLQSKSATQ
601: WSLHLKSLSL GAALTALHVW MNDLSEAALE SGEEFPPLLG INTGHGKHKY SDKGLAAVFE SHLKELNAPF HEAPDKVGWF LTTSVAAKAW LESRRSAGGV
701: SA

Arabidopsis Description

P67Pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.