Factsheet for PGSC0003DMT400034773

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g012670.1.1	Tomato	nucleus	97.1	97.1
Solyc09g042290.1.1	Tomato	cytosol	56.46	95.34
CDY22765	Canola	cytosol	55.15	68.97
VIT_00s0194g00310.t01	Wine grape	cytosol, extracellular	22.06	68.78
CDY42535	Canola	cytosol	54.72	68.42
VIT_00s0194g00270.t01	Wine grape	plastid	68.8	67.62
KRH51188	Soybean	nucleus	63.13	63.5
Bra038453.1-P	Field mustard	plastid	62.7	61.98
Bra040576.1-P	Field mustard	plastid	61.83	61.65
AT4G16390.1	Thale cress	plastid	62.41	61.25
CDY32239	Canola	plastid	62.12	61.14
KRH01964	Soybean	nucleus	62.7	60.67
CDY34461	Canola	plastid	61.39	60.43
GSMUA_Achr7P26730_001	Banana	plastid	44.85	54.4
KRH11577	Soybean	plastid	53.56	53.4
KRH36591	Soybean	plastid	53.41	53.18
KRH36593	Soybean	plastid	53.41	53.1
KRH36594	Soybean	plastid	53.7	52.48
HORVU2Hr1G122510.2	Barley	cytosol	28.01	50.66
Os03t0215900-00	Rice	plastid	48.77	49.7
TraesCS4B01G245000.1	Wheat	plastid	49.49	49.49
TraesCS4A01G079200.1	Wheat	plastid	49.2	49.27
Zm00001d028221_P001	Maize	plastid	49.35	49.2
TraesCS4D01G244400.1	Wheat	plastid	48.91	48.98
EER92639	Sorghum	plastid	49.06	48.91
HORVU4Hr1G067600.1	Barley	nucleus	47.17	46.49
Zm00001d025264_P001	Maize	mitochondrion, peroxisome	20.17	37.98
KRH11579	Soybean	plastid	51.38	34.84
PGSC0003DMT400085913	Potato	plastid	35.56	34.46
PGSC0003DMT400045128	Potato	plastid	35.56	34.46
KRH36592	Soybean	plastid	49.93	33.59
KRH11578	Soybean	plastid	48.48	32.36
PGSC0003DMT400067470	Potato	mitochondrion	18.29	15.87
PGSC0003DMT400034282	Potato	mitochondrion	19.01	15.16

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0031425	GO:GO:0045727	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	UniProt:M1B196
PFAM:PF01535	PFAM:PF13041	PFAM:PF17177	EnsemblPlantsGene:PGSC0003DMG400013362	PGSC:PGSC0003DMG400013362	EnsemblPlants:PGSC0003DMT400034773
InterPro:PPR_long	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF437	InterPro:Pentatricopeptide_repeat
SMART:SM00463	SUPFAM:SSF81901	InterPro:Smr_dom	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000296ACD6

Description

67kD chloroplastic RNA-binding protein, P67.1 [Source:PGSC_GENE;Acc:PGSC0003DMG400013362]

Coordinates

chr11:+:281943..284362

Molecular Weight (calculated)

77237.2 Da

IEP (calculated)

5.312

GRAVY (calculated)

-0.233

Length

689 amino acids

Sequence
(BLAST)

001: MASTPSSTLS PLYESNIFCN FNSPQKFTFP LKLYSKSCIR TTQVSLQEQS QVSNPNNSQY SDRKAVSSSK SKLWVNPKSP RASELKRKSY DFRYASLMKV
101: AESLDSCKPV EEDVFNVLAD LGDKIVEQDA VVTLNNMTNA ETALLAMKYF QQRLKLSKEV IVYNVTLKVL RKNKDLDRAE KVFDEMLERG VKPDNVTFST
201: IISCARQCNL PEKAIEWFEK LPSFGCEPDD VTYSVMIDAY GKAGNVDMAL SLYDRARTEK WRIDAVTFAT LIRIYGAAGN FDGCLNVYEE MKALGVKPNM
301: TVYNSLLDAM GRARRPWQAK NIYGEMLSNG FQPSWGTYAS LIRAYGRARY SEDALKIYKE MKEKGLELSV VLYNTLLAMC ADVGLTDEAV NIFEEMKSSA
401: SETCQPDSWT YSSLITIFSC SGKVSEAEFT LNEMMEAGFE PNIFVLTSLI QCYGKAGRTD DVVRTFDRLS DLGLYADERF TGCLLNVLTQ TAKEDLHKLT
501: ICLERANPKL GYVVKFLVDD EVEEEEGAFK KHATELLDCA TTDVRKAYCN CLIDICVNLN QLERACELLD VGLTLNIYTD IMSRTATQWS LHLKSLSLGA
601: ALTALHIWVS DLNKALESGE EFPSLLGINT GHGKHKYSEK GLAGVFESHL KELNAPFHEA PDKAGWFLTT KVAATSWLES RRAQEVVAA

Best Arabidopsis Sequence Match ( AT4G16390.1 )
(BLAST)

001: MSFHHLCSSP SSLLHDPLPL CNLLSVYPKS TPRSFLSSYN PNSSHFHSRN LLQATHVSVQ EAIPQSEKSK LVDVDLPIPE PTASKSYVWV NPKSPRASQL
101: RRKSYDSRYS SLIKLAESLD ACKPNEADVC DVITGFGGKL FEQDAVVTLN NMTNPETAPL VLNNLLETMK PSREVILYNV TMKVFRKSKD LEKSEKLFDE
201: MLERGIKPDN ATFTTIISCA RQNGVPKRAV EWFEKMSSFG CEPDNVTMAA MIDAYGRAGN VDMALSLYDR ARTEKWRIDA VTFSTLIRIY GVSGNYDGCL
301: NIYEEMKALG VKPNLVIYNR LIDSMGRAKR PWQAKIIYKD LITNGFTPNW STYAALVRAY GRARYGDDAL AIYREMKEKG LSLTVILYNT LLSMCADNRY
401: VDEAFEIFQD MKNCETCDPD SWTFSSLITV YACSGRVSEA EAALLQMREA GFEPTLFVLT SVIQCYGKAK QVDDVVRTFD QVLELGITPD DRFCGCLLNV
501: MTQTPSEEIG KLIGCVEKAK PKLGQVVKML VEEQNCEEGV FKKEASELID SIGSDVKKAY LNCLIDLCVN LNKLERACEI LQLGLEYDIY TGLQSKSATQ
601: WSLHLKSLSL GAALTALHVW MNDLSEAALE SGEEFPPLLG INTGHGKHKY SDKGLAAVFE SHLKELNAPF HEAPDKVGWF LTTSVAAKAW LESRRSAGGV
701: SA

Arabidopsis Description

P67Pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.