Factsheet for PGSC0003DMT400067470

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g078150.1.1	Tomato	nucleus	98.61	98.61
KRH57615	Soybean	cytosol	75.06	81.87
VIT_12s0028g00090.t01	Wine grape	plastid	80.6	79.8
KRG94011	Soybean	plastid	77.2	74.94
AT1G79490.1	Thale cress	mitochondrion, plastid	77.2	73.33
CDX79321	Canola	mitochondrion, plastid	76.07	73.21
Bra003609.1-P	Field mustard	mitochondrion, plastid	75.44	72.61
CDX67993	Canola	mitochondrion, plastid	74.43	72.07
GSMUA_Achr11P...	Banana	mitochondrion	57.93	61.58
TraesCS2D01G422200.1	Wheat	mitochondrion	55.04	56.31
Os04t0612800-01	Rice	mitochondrion	55.29	56.07
KXG27099	Sorghum	mitochondrion	55.04	55.39
TraesCS2A01G424400.1	Wheat	mitochondrion	53.65	54.9
Zm00001d002345_P001	Maize	mitochondrion	53.9	54.38
TraesCS2B01G444000.1	Wheat	plastid	55.42	54.32
HORVU2Hr1G099330.11	Barley	mitochondrion	50.76	51.93
PGSC0003DMT400034773	Potato	plastid	15.87	18.29
PGSC0003DMT400034282	Potato	mitochondrion	18.39	16.9
PGSC0003DMT400085913	Potato	plastid	14.74	16.46
PGSC0003DMT400045128	Potato	plastid	14.74	16.46

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102598668	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	InterPro:IPR002625
InterPro:IPR002885	InterPro:IPR011990	UniProt:M1CHB5	PFAM:PF01535	PFAM:PF13041	PFAM:PF17177
EnsemblPlantsGene:PGSC0003DMG400026230	PGSC:PGSC0003DMG400026230	EnsemblPlants:PGSC0003DMT400067470	InterPro:PPR_long	PFscan:PS50828	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF326	InterPro:Pentatricopeptide_repeat	SMART:SM00463	InterPro:Smr_dom	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000296C448	RefSeq:XP_006359236.1	SEG:seg	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026230]

Coordinates

chr8:+:51261941..51264985

Molecular Weight (calculated)

89807.3 Da

IEP (calculated)

9.266

GRAVY (calculated)

-0.060

Length

794 amino acids

Sequence
(BLAST)

001: MLLFYRNLKH TRNLIEIYRN YHPFRNTSGS CNFNVKEPYF SSRYYCSGKN SDEWTEDVEY LDESGSVIYS GKGIRSVEPG LDDHVMVGGL KKPILNASAV
101: AKLVEIVKRW RWGPEMETQL DKLQFIPNMT HIMQALKVME DSDASLSLFR WAKRQPWYKP NDACYITLFD KLNQSRDFDG IQSVFDDMVL DSGENGASSL
201: FNAYNRVIQY LAKAEKFEVA FCCFKKIQES GCIVDTGTYN SLITVFLNNG LPYKAFEIYE NMEKAGCSLD ASSYELMIPS LAKSGRLDAA FKLFQQMKVN
301: NFRPGFGIFA SLVDSMGKAG RLDTSLKVYT EMQGFGFRPS ATMFVSLIES FVKAGKLETA LRLWDEMKKS GFRPNYGLYT MIVESHAKSG KLDVAMSVFS
401: DMEKAGFLPT PSTYSSLLEM HAASGQVDAA MKLYNSMTNA GLRPGLSTYT ALLTLLAKKK LLDVSAKILL EMKAMGYSVD VNASDVLMVY IKDGSVDLAL
501: RWLRFMGSSA IRTNNFIIRQ LFESCMKSGV YEQAKPLLET YVNSAAKVDL ILYTSILAHL VRCQDENNER HLMSILSATR HKAHTFMCGL FTGPEQRKQP
601: VLTFVREFFQ GIDYELEEGA SRYFVNVLLN YLVLMGQINR ARCVWKVAYE NKLFPKAIVF DQHIAWSLDV RNLSVGAALV AVVHTLHRFR KRMLYYGVVP
701: RRIKLVTGPT LKIVVAQMLS SVESPFEVSK VVLRAPGDAV LDWFKKPIVQ QFLLNEIPSR SDILMHKLNI LFPTSAPEIR SLSPPKPIFA GKAM

Best Arabidopsis Sequence Match ( AT1G79490.1 )
(BLAST)

001: MIRGRTAKVI PRNVIFTLSR SSISESPLIS PSRINPKLAG SFSFNIRLLS YFTVRNGFCP DCSVPRDPNF VGLTTQCRSI VRRFCSEKIG SSESSGWTEE
101: VEYLDESGSV LHSGKGIRSV EPGLDDHVMV GGLKKPYMNA SSVAKIVEVV QRWKWGPELE TQLDKLQFVP NMVHITQSLK IVKEVDAALS LFRWAKKQPW
201: YLPSDECYVV LFDGLNQGRD FVGIQSLFEE MVQDSSSHGD LSFNAYNQVI QYLAKAEKLE VAFCCFKKAQ ESGCKIDTQT YNNLMMLFLN KGLPYKAFEI
301: YESMEKTDSL LDGSTYELII PSLAKSGRLD AAFKLFQQMK ERKLRPSFSV FSSLVDSMGK AGRLDTSMKV YMEMQGFGHR PSATMFVSLI DSYAKAGKLD
401: TALRLWDEMK KSGFRPNFGL YTMIIESHAK SGKLEVAMTV FKDMEKAGFL PTPSTYSCLL EMHAGSGQVD SAMKIYNSMT NAGLRPGLSS YISLLTLLAN
501: KRLVDVAGKI LLEMKAMGYS VDVCASDVLM IYIKDASVDL ALKWLRFMGS SGIKTNNFII RQLFESCMKN GLYDSARPLL ETLVHSAGKV DLVLYTSILA
601: HLVRCQDEDK ERQLMSILSA TKHKAHAFMC GLFTGPEQRK QPVLTFVREF YQGIDYELEE GAARYFVNVL LNYLVLMGQI NRARCVWKVA YENKLFPKAI
701: VFDQHIAWSL DVRNLSVGAA LIAVVHTLHR FRKRMLYYGV VPRRIKLVTG PTLKIVIAQM LSSVESPFEV SKVVLRAPGE LVMEWFKKPI VQQFLLNEIP
801: SRSDILMHKM NVMFPSSAPE LRSMSPPKPL MSSKAF

Arabidopsis Description

EMB2217Pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAK0]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.