Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400085913 | Potato | plastid | 100.0 | 100.0 |
| Solyc08g077140.1.1 | Tomato | nucleus | 36.99 | 97.41 |
| VIT_02s0012g01090.t01 | Wine grape | plastid | 71.17 | 69.99 |
| Bra025013.1-P | Field mustard | plastid | 65.26 | 65.26 |
| CDX77673 | Canola | plastid | 65.26 | 65.26 |
| CDY33481 | Canola | plastid | 65.26 | 65.26 |
| KRH58221 | Soybean | cytosol | 64.84 | 64.75 |
| AT5G46580.1 | Thale cress | plastid | 63.01 | 63.01 |
| KRH04318 | Soybean | cytosol | 57.81 | 62.75 |
| GSMUA_Achr11P... | Banana | plastid | 52.74 | 56.05 |
| Os03t0856100-01 | Rice | plastid | 44.02 | 48.91 |
| EER93066 | Sorghum | plastid | 48.38 | 47.65 |
| TraesCS5B01G559600.1 | Wheat | plastid | 46.98 | 46.91 |
| TraesCS4A01G319500.1 | Wheat | plastid | 46.69 | 46.89 |
| Zm00001d034892_P001 | Maize | plastid | 47.12 | 46.79 |
| HORVU5Hr1G124070.6 | Barley | plastid | 47.68 | 46.76 |
| TraesCS5D01G565800.1 | Wheat | mitochondrion, plastid | 47.4 | 45.48 |
| PGSC0003DMT400034773 | Potato | plastid | 34.46 | 35.56 |
| PGSC0003DMT400067470 | Potato | mitochondrion | 16.46 | 14.74 |
| PGSC0003DMT400034282 | Potato | mitochondrion | 17.86 | 14.7 |
Protein Annotations
| Gene3D:1.25.40.10 | EntrezGene:102591024 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002625 | InterPro:IPR002885 | InterPro:IPR011990 | UniProt:M1DAJ8 | PFAM:PF13041 | PFAM:PF13812 |
| PFAM:PF17177 | EnsemblPlantsGene:PGSC0003DMG402017504 | PGSC:PGSC0003DMG402017504 | EnsemblPlants:PGSC0003DMT400045128 | InterPro:PPR_long | PFscan:PS50828 |
| PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF357 | InterPro:Pentatricopeptide_repeat | SUPFAM:SSF81901 | InterPro:Smr_dom |
| TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0002952154 | RefSeq:XP_006352838.1 | SEG:seg | : |
Description
Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG402017504]
Coordinates
chr8:+:49877647..49880763
Molecular Weight (calculated)
80041.1 Da
IEP (calculated)
7.321
GRAVY (calculated)
-0.221
Length
711 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAKFSTGLD IHCSIPYTSD TKLLYGSSSS STKSSRLSLK RFTILCNSTS KSPKPNLDLD SSRKKPSLSE QLKPLSNTIL DDPPNQARIL SKPKSTWVNP
101: TRPKPSVLSL QRQKRSSYSY NPQIRDLKNF ARRLSESHFS DDAFLAVLED IPHPPTRDNA LLVLNSLRPW QKTIFFFNWI KTRNLFPLET IFYNVAMKSL
201: RFGRQFQQIE ELAFEMIDSG IELDNITYST IITCAKRCNL FDKAVEWFER MYKTGLMPDE VTYSAVLDVY AQLGKVEEVM SLYERGRASG WTPDPVAFAV
301: LAKVFGAAGD YDGIRFVLQE MKALEVQPNL VVYNTLLEAM GKAGKPGLAR SLFEEMVDSG LTPDAKTLTA LIKIYGKARW ARDALDLWER MKSNGWPMDF
401: ILYNTLLSMC ADLGLEEEAE TLFHDMRKSD NCRLDSWSYT AMLNIYGSVG NAEKAMALFE EMSRVGIELN VMGCTCLVQC FGRAQRIDDL VKVFEISVQR
501: GVKPDDRLCG CLLSVVSYCK GDDADKVLAC LQQANPRLVT FVKMLEDEST SYDIVKEEFR SILTNTSDDA RRPFCNCLID ICRKRNLAER AHELLYLGTV
601: YGLYPGLHTK TPEEWRLNVR ALSVGAAQTA FEEWMRTLAK IVQSEEPLPE VLSANTGAGT HKFSQGLANA FASHVEKLAA PFKQSEEKAG FFIATREDVV
701: LWVQSKAAAT A
101: TRPKPSVLSL QRQKRSSYSY NPQIRDLKNF ARRLSESHFS DDAFLAVLED IPHPPTRDNA LLVLNSLRPW QKTIFFFNWI KTRNLFPLET IFYNVAMKSL
201: RFGRQFQQIE ELAFEMIDSG IELDNITYST IITCAKRCNL FDKAVEWFER MYKTGLMPDE VTYSAVLDVY AQLGKVEEVM SLYERGRASG WTPDPVAFAV
301: LAKVFGAAGD YDGIRFVLQE MKALEVQPNL VVYNTLLEAM GKAGKPGLAR SLFEEMVDSG LTPDAKTLTA LIKIYGKARW ARDALDLWER MKSNGWPMDF
401: ILYNTLLSMC ADLGLEEEAE TLFHDMRKSD NCRLDSWSYT AMLNIYGSVG NAEKAMALFE EMSRVGIELN VMGCTCLVQC FGRAQRIDDL VKVFEISVQR
501: GVKPDDRLCG CLLSVVSYCK GDDADKVLAC LQQANPRLVT FVKMLEDEST SYDIVKEEFR SILTNTSDDA RRPFCNCLID ICRKRNLAER AHELLYLGTV
601: YGLYPGLHTK TPEEWRLNVR ALSVGAAQTA FEEWMRTLAK IVQSEEPLPE VLSANTGAGT HKFSQGLANA FASHVEKLAA PFKQSEEKAG FFIATREDVV
701: LWVQSKAAAT A
001: MATVLTTAID VCFNPQNSDT KKHSLFLKPS LFRQSRSRKL NISCSSLKQP KTLEEEPITT KTPSLSEQLK PLSATTLRQE QTQILSKPKS VWVNPTRPKR
101: SVLSLQRQKR SAYSYNPQIK DLRAFALKLN SSIFTEKSEF LSLLDEIPHP PNRDNALLVL NSLREWQKTH TFFNWVKSKS LFPMETIFYN VTMKSLRFGR
201: QFQLIEEMAL EMVKDGVELD NITYSTIITC AKRCNLYNKA IEWFERMYKT GLMPDEVTYS AILDVYSKSG KVEEVLSLYE RAVATGWKPD AIAFSVLGKM
301: FGEAGDYDGI RYVLQEMKSM DVKPNVVVYN TLLEAMGRAG KPGLARSLFN EMLEAGLTPN EKTLTALVKI YGKARWARDA LQLWEEMKAK KWPMDFILYN
401: TLLNMCADIG LEEEAERLFN DMKESVQCRP DNFSYTAMLN IYGSGGKAEK AMELFEEMLK AGVQVNVMGC TCLVQCLGKA KRIDDVVYVF DLSIKRGVKP
501: DDRLCGCLLS VMALCESSED AEKVMACLER ANKKLVTFVN LIVDEKTEYE TVKEEFKLVI NATQVEARRP FCNCLIDICR GNNRHERAHE LLYLGTLFGL
601: YPGLHNKTIK EWSLDVRSLS VGAAETALEE WMRTLANIIK RQEELPELFL AQTGTGTHRF SQGLANSFAL HLQQLSAPFR QSDRPGIFVA TKEDLVSWLE
701: SKFPPLVTSQ A
101: SVLSLQRQKR SAYSYNPQIK DLRAFALKLN SSIFTEKSEF LSLLDEIPHP PNRDNALLVL NSLREWQKTH TFFNWVKSKS LFPMETIFYN VTMKSLRFGR
201: QFQLIEEMAL EMVKDGVELD NITYSTIITC AKRCNLYNKA IEWFERMYKT GLMPDEVTYS AILDVYSKSG KVEEVLSLYE RAVATGWKPD AIAFSVLGKM
301: FGEAGDYDGI RYVLQEMKSM DVKPNVVVYN TLLEAMGRAG KPGLARSLFN EMLEAGLTPN EKTLTALVKI YGKARWARDA LQLWEEMKAK KWPMDFILYN
401: TLLNMCADIG LEEEAERLFN DMKESVQCRP DNFSYTAMLN IYGSGGKAEK AMELFEEMLK AGVQVNVMGC TCLVQCLGKA KRIDDVVYVF DLSIKRGVKP
501: DDRLCGCLLS VMALCESSED AEKVMACLER ANKKLVTFVN LIVDEKTEYE TVKEEFKLVI NATQVEARRP FCNCLIDICR GNNRHERAHE LLYLGTLFGL
601: YPGLHNKTIK EWSLDVRSLS VGAAETALEE WMRTLANIIK RQEELPELFL AQTGTGTHRF SQGLANSFAL HLQQLSAPFR QSDRPGIFVA TKEDLVSWLE
701: SKFPPLVTSQ A
Arabidopsis Description
Pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS25]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.