Factsheet for Solyc08g077140.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400085913	Potato	plastid	97.41	36.99
PGSC0003DMT400045128	Potato	plastid	97.41	36.99
KRH04318	Soybean	cytosol	67.41	27.79
VIT_02s0012g01090.t01	Wine grape	plastid	72.96	27.25
KRH58221	Soybean	cytosol	68.52	25.98
CDX77673	Canola	plastid	66.67	25.32
Bra025013.1-P	Field mustard	plastid	66.3	25.18
CDY33481	Canola	plastid	66.3	25.18
AT5G46580.1	Thale cress	plastid	64.81	24.61
Solyc09g042290.1.1	Tomato	cytosol	36.3	24.02
Os03t0856100-01	Rice	plastid	47.78	20.16
GSMUA_Achr11P...	Banana	plastid	49.63	20.03
EER93066	Sorghum	plastid	47.78	17.87
TraesCS4A01G319500.1	Wheat	plastid	46.3	17.66
Zm00001d034892_P001	Maize	plastid	46.67	17.6
HORVU5Hr1G124070.6	Barley	plastid	47.04	17.52
TraesCS5B01G559600.1	Wheat	plastid	45.56	17.28
TraesCS5D01G565800.1	Wheat	mitochondrion, plastid	45.56	16.6
Solyc11g012670.1.1	Tomato	nucleus	37.04	14.51
Solyc08g078150.1.1	Tomato	nucleus	19.63	6.68
Solyc03g113380.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	20.37	5.96

Protein Annotations

EnsemblPlants:Solyc08g077140.1.1	EnsemblPlantsGene:Solyc08g077140.1	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:Smr_dom	InterPro:TPR-like_helical_dom_sf
PANTHER:PTHR24015	PANTHER:PTHR24015:SF357	PFAM:PF13812	PFscan:PS50828	PFscan:PS51375	SMART:SM00463
TIGRFAMs:TIGR00756	UniParc:UPI000276C29B	UniProt:K4CN74	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr8:+:61046909..61047721

Molecular Weight (calculated)

29970.9 Da

IEP (calculated)

6.356

GRAVY (calculated)

-0.133

Length

270 amino acids

Sequence
(BLAST)

001: MLNIYGSVGN AEKAMALFEE MSKVGIELNV MGCTCLVQCF GRAQRIDDLV KVFEVSVQRG VKPDDRLCGC LLSVVSYCKG DDADKVLACL QQANPRLVTF
101: VKMLEDESTS YDIVKEEFRS ILTNTSDDAR RPFCNCLIDI CRKRNRAERA HELLYLGTVY GLYPGLHTKT PEEWRLNVRA LSVGAAQTAF EEWMRTLAKI
201: VQSEEPLPEV LSANTGAGTH KFSQGLANAF ASHVEKFAAP FKQSEEKAGF FIATREDVVS WVHSKAAANA

Best Arabidopsis Sequence Match ( AT5G46580.1 )
(BLAST)

001: MATVLTTAID VCFNPQNSDT KKHSLFLKPS LFRQSRSRKL NISCSSLKQP KTLEEEPITT KTPSLSEQLK PLSATTLRQE QTQILSKPKS VWVNPTRPKR
101: SVLSLQRQKR SAYSYNPQIK DLRAFALKLN SSIFTEKSEF LSLLDEIPHP PNRDNALLVL NSLREWQKTH TFFNWVKSKS LFPMETIFYN VTMKSLRFGR
201: QFQLIEEMAL EMVKDGVELD NITYSTIITC AKRCNLYNKA IEWFERMYKT GLMPDEVTYS AILDVYSKSG KVEEVLSLYE RAVATGWKPD AIAFSVLGKM
301: FGEAGDYDGI RYVLQEMKSM DVKPNVVVYN TLLEAMGRAG KPGLARSLFN EMLEAGLTPN EKTLTALVKI YGKARWARDA LQLWEEMKAK KWPMDFILYN
401: TLLNMCADIG LEEEAERLFN DMKESVQCRP DNFSYTAMLN IYGSGGKAEK AMELFEEMLK AGVQVNVMGC TCLVQCLGKA KRIDDVVYVF DLSIKRGVKP
501: DDRLCGCLLS VMALCESSED AEKVMACLER ANKKLVTFVN LIVDEKTEYE TVKEEFKLVI NATQVEARRP FCNCLIDICR GNNRHERAHE LLYLGTLFGL
601: YPGLHNKTIK EWSLDVRSLS VGAAETALEE WMRTLANIIK RQEELPELFL AQTGTGTHRF SQGLANSFAL HLQQLSAPFR QSDRPGIFVA TKEDLVSWLE
701: SKFPPLVTSQ A

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS25]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.