CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 5
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58221	Soybean	cytosol	96.18	88.48
Solyc08g077140.1.1	Tomato	nucleus	27.79	67.41
VIT_02s0012g01090.t01	Wine grape	plastid	63.82	57.81
PGSC0003DMT400085913	Potato	plastid	62.75	57.81
PGSC0003DMT400045128	Potato	plastid	62.75	57.81
Bra025013.1-P	Field mustard	plastid	60.61	55.84
CDY33481	Canola	plastid	60.61	55.84
CDX77673	Canola	plastid	60.0	55.27
AT5G46580.1	Thale cress	plastid	58.47	53.87
GSMUA_Achr11P...	Banana	plastid	47.33	46.34
Os03t0856100-01	Rice	plastid	41.68	42.66
Zm00001d034892_P001	Maize	plastid	43.97	40.22
EER93066	Sorghum	plastid	43.97	39.89
TraesCS5B01G559600.1	Wheat	plastid	43.21	39.75
TraesCS4A01G319500.1	Wheat	plastid	42.9	39.69
HORVU5Hr1G124070.6	Barley	plastid	43.36	39.17
TraesCS5D01G565800.1	Wheat	mitochondrion, plastid	42.29	37.38
KRH51188	Soybean	nucleus	32.82	31.39
KRH11577	Soybean	plastid	31.76	30.1
KRH36591	Soybean	plastid	31.3	29.62
KRH01964	Soybean	nucleus	31.91	29.35
KRH36594	Soybean	plastid	31.3	29.08
KRH36593	Soybean	plastid	30.08	28.43
KRH11579	Soybean	plastid	29.01	18.7
KRH36592	Soybean	plastid	28.24	18.07
KRH11578	Soybean	plastid	28.4	18.02
KRH57615	Soybean	cytosol	17.25	15.52
KRG94011	Soybean	plastid	18.17	14.55
KRH54492	Soybean	mitochondrion	18.93	14.06
KRH63421	Soybean	plastid	18.93	13.81
KRH56975	Soybean	mitochondrion	17.56	13.13

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100796315	MapMan:35.1	EMBL:ACUP02010398	EnsemblPlantsGene:GLYMA_17G153900	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016787	GO:GO:0090305	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	UniProt:K7MLT9
EnsemblPlants:KRH04318	ProteinID:KRH04318	ProteinID:KRH04318.1	PFAM:PF01535	PFAM:PF13041	PFscan:PS50828
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF357	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF81901
InterPro:Smr_dom	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000295386C	SEG:seg	:

Description

hypothetical protein

Coordinates

chr17:-:12919733..12922117

Molecular Weight (calculated)

74000.1 Da

IEP (calculated)

8.159

GRAVY (calculated)

-0.282

Length

655 amino acids

Sequence
(BLAST)

001: MATPLSTVVD VYFTDTKRTR FSITTTPCRQ KTNRKFFIHC ATSNSTPEAP PTPTSDNNNK KKNTSLSDQL APLANKTLSS ATRDQSYALS KPKSTWVNPT
101: KAKRSVLSSE RQKRATYSYS PQLRDLKRFA QKLNESGSSE DAFLACLEEI PRPISRENAL LILNTLKPWQ KTNLFLNWIR TQNLLPMETI FYNVTMKSLR
201: FGKQFGLIEE LAHQMIDNGV PLDNITYSTI ISCAKKCNLY DKAVHWFERM YKTSLMPDEE MESVGVQPNL VVYNTLLEAM GKAGKPVFAR GLFEEMIELG
301: IVPNEKTLTA VIKIYGKARW SRDALELWQR MKENGWPMDF ILYNTLLNMC ADVGLVEEAE TLFRDMKQSA HCKPDSWSYT AMLNIYGSQG DVDKAMKLFN
401: EMCKSGVELN VMGFTCLIQC LGRATEFDDL VRVFGISVER GIKPDDRLCG CLLSVVSLSQ GSNDEEKVLA CLQRANPKLV AFIHLIEDEK SSFESVKEEF
501: KGIMSNAAVE VRRPFCNCLI DICRNKDLRE RAHELLYLGT LYGLYPGLHN KTDNEWCLDV RSLSVGAALT ALEEWMWTLT KIVKREETLP ELFLAQTGTG
601: AHKFAQGLNI SFASHLRKLA APFKQSEEKI GCFIASREDL VSWVQSKSTA AATAT

Best Arabidopsis Sequence Match ( AT5G46580.1 )
(BLAST)

001: MATVLTTAID VCFNPQNSDT KKHSLFLKPS LFRQSRSRKL NISCSSLKQP KTLEEEPITT KTPSLSEQLK PLSATTLRQE QTQILSKPKS VWVNPTRPKR
101: SVLSLQRQKR SAYSYNPQIK DLRAFALKLN SSIFTEKSEF LSLLDEIPHP PNRDNALLVL NSLREWQKTH TFFNWVKSKS LFPMETIFYN VTMKSLRFGR
201: QFQLIEEMAL EMVKDGVELD NITYSTIITC AKRCNLYNKA IEWFERMYKT GLMPDEVTYS AILDVYSKSG KVEEVLSLYE RAVATGWKPD AIAFSVLGKM
301: FGEAGDYDGI RYVLQEMKSM DVKPNVVVYN TLLEAMGRAG KPGLARSLFN EMLEAGLTPN EKTLTALVKI YGKARWARDA LQLWEEMKAK KWPMDFILYN
401: TLLNMCADIG LEEEAERLFN DMKESVQCRP DNFSYTAMLN IYGSGGKAEK AMELFEEMLK AGVQVNVMGC TCLVQCLGKA KRIDDVVYVF DLSIKRGVKP
501: DDRLCGCLLS VMALCESSED AEKVMACLER ANKKLVTFVN LIVDEKTEYE TVKEEFKLVI NATQVEARRP FCNCLIDICR GNNRHERAHE LLYLGTLFGL
601: YPGLHNKTIK EWSLDVRSLS VGAAETALEE WMRTLANIIK RQEELPELFL AQTGTGTHRF SQGLANSFAL HLQQLSAPFR QSDRPGIFVA TKEDLVSWLE
701: SKFPPLVTSQ A

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS25]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.