CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
endoplasmic reticulum 4
extracellular 2
vacuole 2
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51188	Soybean	nucleus	87.08	90.51
Solyc09g042290.1.1	Tomato	cytosol	40.17	70.1
VIT_00s0194g00310.t01	Wine grape	cytosol, extracellular	21.49	69.23
CDY22765	Canola	cytosol	52.67	68.06
CDY42535	Canola	cytosol	52.67	68.06
VIT_00s0194g00270.t01	Wine grape	plastid	65.87	66.9
Solyc11g012670.1.1	Tomato	nucleus	61.52	63.57
PGSC0003DMT400034773	Potato	plastid	60.67	62.7
CDY34461	Canola	plastid	61.1	62.14
Bra040576.1-P	Field mustard	plastid	59.55	61.36
Bra038453.1-P	Field mustard	plastid	59.69	60.98
CDY32239	Canola	plastid	59.69	60.71
AT4G16390.1	Thale cress	plastid	59.55	60.4
KRH36594	Soybean	plastid	59.69	60.28
KRH36593	Soybean	plastid	58.01	59.6
KRH36591	Soybean	plastid	57.58	59.25
KRH11577	Soybean	plastid	57.02	58.76
GSMUA_Achr7P26730_001	Banana	plastid	44.66	55.99
HORVU2Hr1G122510.2	Barley	cytosol	27.11	50.66
EER92639	Sorghum	plastid	49.02	50.51
Zm00001d028221_P001	Maize	plastid	48.74	50.22
Os03t0215900-00	Rice	plastid	47.61	50.15
TraesCS4A01G079200.1	Wheat	plastid	47.75	49.42
TraesCS4B01G245000.1	Wheat	plastid	47.61	49.2
TraesCS4D01G244400.1	Wheat	plastid	47.05	48.69
HORVU4Hr1G067600.1	Barley	nucleus	46.21	47.07
Zm00001d025264_P001	Maize	mitochondrion, peroxisome	19.94	38.8
KRH11579	Soybean	plastid	55.34	38.78
KRH36592	Soybean	plastid	53.51	37.21
KRH11578	Soybean	plastid	52.53	36.24
KRH58221	Soybean	cytosol	33.29	33.29
KRH04318	Soybean	cytosol	29.35	31.91
KRH57615	Soybean	cytosol	15.87	15.52
KRG94011	Soybean	plastid	17.13	14.91
KRH54492	Soybean	mitochondrion	17.7	14.29
KRH56975	Soybean	mitochondrion	17.42	14.16
KRH63421	Soybean	plastid	17.28	13.7

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100794718	MapMan:35.1	EMBL:ACUP02010293	EnsemblPlantsGene:GLYMA_17G006500	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016787	GO:GO:0031425	GO:GO:0090305	UniProt:I1MQY6	InterPro:IPR002625	InterPro:IPR002885
InterPro:IPR011990	EnsemblPlants:KRH01964	ProteinID:KRH01964	ProteinID:KRH01964.1	PFAM:PF01535	PFAM:PF13041
PFAM:PF17177	InterPro:PPR_long	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF437
InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF48452	SignalP:SignalP-noTM	InterPro:Smr_dom	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI00029674C5	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:594368..597067

Molecular Weight (calculated)

80104.0 Da

IEP (calculated)

6.619

GRAVY (calculated)

-0.208

Length

712 amino acids

Sequence
(BLAST)

001: MLILPFHLWI FVVDVSLSSE GAKMAYNLCS SPSSLFHDLP SISSSSSSCR KFKLRNSSSF FQPSPSPTPH SKTLLHVSLH EPIPEHLPPH ANSSSSSKSN
101: YIWVNPRSPR AKQLERRSYD ARYTSLVNLA LSLDSCNPSQ EDVSLVLKDL WGRVIEQDAV IVINNMSNPR VVPFVLNYFQ RRIRPTREVI LYNVTLKVFR
201: KSKDLDAMEK LFDEMLQRGV RPDNVSFSTI ISCARICSLP NKAVEWFEKM PSFRCEPDDV TYSAMIDAYG RAGNIDMALR LYDRARTEKW RLDSVTFSTL
301: IKMYGLAGNY DGCLNVYQEM KALGVKSNMV IYNTLLDAMG RAKRPWQAKS IYTEMTNNGF LPNWATYASL LRAYGRGRYS EDALFVYKEM KEKGMEMNTH
401: LYNTLLAMCA DLGLADDAFK IFEDMKSSAT CLCDSWTFSS LITIYSCSGN VSEAERMLNE MIESGFQPTI FVLTSLVQCY GKVGRTDDVL KTFNQLLDLG
501: ISPDDRFCGC LLNVMTQTPK EELGKLNDCV EKANPKLGSV LRYLVEGLEE GDGEFRKEAS ELFNSIADEV KKPFCNSLID LCVNLNLLDK ACELLDLGLT
601: LEIYTDIQSK SQTQWSLHLK SLSLGASLTA LHAWINDLSK TLESGEDLPP LLGINTGHGK HRYSDKGLAN VVESHLNELN APFHEAPDKA GWFLTTQVAA
701: KSWLESRKLV TA

Best Arabidopsis Sequence Match ( AT4G16390.1 )
(BLAST)

001: MSFHHLCSSP SSLLHDPLPL CNLLSVYPKS TPRSFLSSYN PNSSHFHSRN LLQATHVSVQ EAIPQSEKSK LVDVDLPIPE PTASKSYVWV NPKSPRASQL
101: RRKSYDSRYS SLIKLAESLD ACKPNEADVC DVITGFGGKL FEQDAVVTLN NMTNPETAPL VLNNLLETMK PSREVILYNV TMKVFRKSKD LEKSEKLFDE
201: MLERGIKPDN ATFTTIISCA RQNGVPKRAV EWFEKMSSFG CEPDNVTMAA MIDAYGRAGN VDMALSLYDR ARTEKWRIDA VTFSTLIRIY GVSGNYDGCL
301: NIYEEMKALG VKPNLVIYNR LIDSMGRAKR PWQAKIIYKD LITNGFTPNW STYAALVRAY GRARYGDDAL AIYREMKEKG LSLTVILYNT LLSMCADNRY
401: VDEAFEIFQD MKNCETCDPD SWTFSSLITV YACSGRVSEA EAALLQMREA GFEPTLFVLT SVIQCYGKAK QVDDVVRTFD QVLELGITPD DRFCGCLLNV
501: MTQTPSEEIG KLIGCVEKAK PKLGQVVKML VEEQNCEEGV FKKEASELID SIGSDVKKAY LNCLIDLCVN LNKLERACEI LQLGLEYDIY TGLQSKSATQ
601: WSLHLKSLSL GAALTALHVW MNDLSEAALE SGEEFPPLLG INTGHGKHKY SDKGLAAVFE SHLKELNAPF HEAPDKVGWF LTTSVAAKAW LESRRSAGGV
701: SA

Arabidopsis Description

P67Pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.