CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57615	Soybean	cytosol	84.72	95.19
VIT_12s0028g00090.t01	Wine grape	plastid	76.16	77.68
PGSC0003DMT400067470	Potato	mitochondrion	74.94	77.2
Solyc08g078150.1.1	Tomato	nucleus	74.82	77.08
CDX79321	Canola	mitochondrion, plastid	73.47	72.85
CDX67993	Canola	mitochondrion, plastid	72.62	72.44
Bra003609.1-P	Field mustard	mitochondrion, plastid	72.74	72.12
AT1G79490.1	Thale cress	mitochondrion, plastid	73.59	72.01
GSMUA_Achr11P...	Banana	mitochondrion	56.85	62.25
KXG27099	Sorghum	mitochondrion	53.91	55.89
TraesCS2D01G422200.1	Wheat	mitochondrion	52.93	55.8
Os04t0612800-01	Rice	mitochondrion	53.3	55.68
Zm00001d002345_P001	Maize	mitochondrion	53.55	55.65
TraesCS2A01G424400.1	Wheat	mitochondrion	52.08	54.9
TraesCS2B01G444000.1	Wheat	plastid	53.18	53.7
HORVU2Hr1G099330.11	Barley	mitochondrion	49.14	51.8
KRH04318	Soybean	cytosol	14.55	18.17
KRH58221	Soybean	cytosol	15.77	18.12
KRH36593	Soybean	plastid	15.16	17.89
KRH54492	Soybean	mitochondrion	19.07	17.69
KRH11577	Soybean	plastid	14.67	17.37
KRH56975	Soybean	mitochondrion	18.58	17.35
KRH01964	Soybean	nucleus	14.91	17.13
KRH51188	Soybean	nucleus	14.3	17.08
KRH63421	Soybean	plastid	18.7	17.04
KRH36591	Soybean	plastid	13.94	16.47
KRH36594	Soybean	plastid	14.18	16.45
KRH11579	Soybean	plastid	15.53	12.5
KRH36592	Soybean	plastid	15.65	12.5
KRH11578	Soybean	plastid	15.28	12.11

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100818399	MapMan:35.1	EMBL:ACUP02011662	EnsemblPlantsGene:GLYMA_19G055700	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0090305	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	UniProt:K7MWS5	EnsemblPlants:KRG94011
ProteinID:KRG94011	ProteinID:KRG94011.1	PFAM:PF01535	PFAM:PF13041	PFscan:PS50828	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF326	InterPro:Pentatricopeptide_repeat	SMART:SM00463	InterPro:Smr_dom	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI00023D8285	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:9352916..9355825

Molecular Weight (calculated)

92166.2 Da

IEP (calculated)

9.305

GRAVY (calculated)

0.045

Length

818 amino acids

Sequence
(BLAST)

001: MIYNRHLLSS ATNLYKLTHQ FSLLSRAYSF VSPPPFTQKF TFLSPPWRFP STPRLCNGSN LVGMRIMRCY CHDSGGAKEW TEEIEYLDES GGVIYKGKGV
101: RSVEPGVDDH VMVGEVKKPF VNALAVAKIV EVVKRWKWGP ELDTQLDKLQ FVPNMTHIAQ ALKVVGDVDA CLSLFRWAKR QAWYVPSDDC YVMLFDGLNQ
201: KRDFEGIQLL FDEMVGDSAD GVSLFAACNR VIRYLAKAEK LEVSFCCFKK ILNAGCKVDT ETYNSLITLF LNKGLPYKAF EMYESMEKAG CSLDGSTYEL
301: MIPNLAKSGR LDAAFKLFQE MKVRGFRPGL NVFASLVDSM GKAGRLDSAM KVYMEMRGYG YKPPPTIYVS LIESYVKSGK LETALRLWDE MRMAGFRPNF
401: GLYTLIIESH AKSGKLEIAM STFLDMEKAG FLPTPSTYAC LLEMHAASGQ IDPAMKLYNS MTNAGLRPGL STYTVLLTLL ANKKLVDVAA KILLEMKAMG
501: YSVDVTASDI LMVYIKEGSV DLALRWLRFM GSSGIRTNNF IIRQLFESCM KSGLFESAKP LLETYVNSAA KVDLILYTSI LAHLVRCQEE KNERHLMSIL
601: SATKHKAHSF MCGLFTGPEH RGQPVLTFVR EFFQGIDYEL EEGAAKYFVN VLLNYLVLMG QINRARCVWK VAYENKLFPK AIVFDQHIAW SLDVRNLSVG
701: AALIAVVHTL HRFRKRMLYY GIVPRRIKLV TGATLKIVIA QMLSSVESPF EVSKVVLRAS GDSVMEWFKK PIVQQFLLNE IPSRSDILMH KLNILFPSSA
801: PELRSLSPPK PLIASRAM

Best Arabidopsis Sequence Match ( AT1G79490.1 )
(BLAST)

001: MIRGRTAKVI PRNVIFTLSR SSISESPLIS PSRINPKLAG SFSFNIRLLS YFTVRNGFCP DCSVPRDPNF VGLTTQCRSI VRRFCSEKIG SSESSGWTEE
101: VEYLDESGSV LHSGKGIRSV EPGLDDHVMV GGLKKPYMNA SSVAKIVEVV QRWKWGPELE TQLDKLQFVP NMVHITQSLK IVKEVDAALS LFRWAKKQPW
201: YLPSDECYVV LFDGLNQGRD FVGIQSLFEE MVQDSSSHGD LSFNAYNQVI QYLAKAEKLE VAFCCFKKAQ ESGCKIDTQT YNNLMMLFLN KGLPYKAFEI
301: YESMEKTDSL LDGSTYELII PSLAKSGRLD AAFKLFQQMK ERKLRPSFSV FSSLVDSMGK AGRLDTSMKV YMEMQGFGHR PSATMFVSLI DSYAKAGKLD
401: TALRLWDEMK KSGFRPNFGL YTMIIESHAK SGKLEVAMTV FKDMEKAGFL PTPSTYSCLL EMHAGSGQVD SAMKIYNSMT NAGLRPGLSS YISLLTLLAN
501: KRLVDVAGKI LLEMKAMGYS VDVCASDVLM IYIKDASVDL ALKWLRFMGS SGIKTNNFII RQLFESCMKN GLYDSARPLL ETLVHSAGKV DLVLYTSILA
601: HLVRCQDEDK ERQLMSILSA TKHKAHAFMC GLFTGPEQRK QPVLTFVREF YQGIDYELEE GAARYFVNVL LNYLVLMGQI NRARCVWKVA YENKLFPKAI
701: VFDQHIAWSL DVRNLSVGAA LIAVVHTLHR FRKRMLYYGV VPRRIKLVTG PTLKIVIAQM LSSVESPFEV SKVVLRAPGE LVMEWFKKPI VQQFLLNEIP
801: SRSDILMHKM NVMFPSSAPE LRSMSPPKPL MSSKAF

Arabidopsis Description

EMB2217Pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAK0]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.