Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
25464976
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400067470 | Potato | mitochondrion | 98.61 | 98.61 |
| KRH57615 | Soybean | cytosol | 74.94 | 81.73 |
| VIT_12s0028g00090.t01 | Wine grape | plastid | 80.6 | 79.8 |
| KRG94011 | Soybean | plastid | 77.08 | 74.82 |
| CDX79321 | Canola | mitochondrion, plastid | 75.94 | 73.09 |
| AT1G79490.1 | Thale cress | mitochondrion, plastid | 76.83 | 72.97 |
| Bra003609.1-P | Field mustard | mitochondrion, plastid | 75.44 | 72.61 |
| CDX67993 | Canola | mitochondrion, plastid | 74.06 | 71.71 |
| GSMUA_Achr11P... | Banana | mitochondrion | 58.06 | 61.71 |
| Os04t0612800-01 | Rice | mitochondrion | 55.42 | 56.19 |
| TraesCS2D01G422200.1 | Wheat | mitochondrion | 54.79 | 56.06 |
| KXG27099 | Sorghum | mitochondrion | 55.16 | 55.51 |
| TraesCS2A01G424400.1 | Wheat | mitochondrion | 53.65 | 54.9 |
| Zm00001d002345_P001 | Maize | mitochondrion | 54.03 | 54.51 |
| TraesCS2B01G444000.1 | Wheat | plastid | 55.16 | 54.07 |
| HORVU2Hr1G099330.11 | Barley | mitochondrion | 50.5 | 51.68 |
| Solyc08g077140.1.1 | Tomato | nucleus | 6.68 | 19.63 |
| Solyc09g042290.1.1 | Tomato | cytosol | 9.95 | 19.36 |
| Solyc11g012670.1.1 | Tomato | nucleus | 15.87 | 18.29 |
| Solyc03g113380.2.1 | Tomato | cytosol, endoplasmic reticulum, plastid | 18.39 | 15.82 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009451 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0090305 | InterPro:IPR002625 | InterPro:IPR002885 |
| InterPro:IPR011990 | UniProt:K4CNH4 | PFAM:PF01535 | PFAM:PF13041 | PFAM:PF17177 | InterPro:PPR_long |
| PFscan:PS50828 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF326 | InterPro:Pentatricopeptide_repeat | SMART:SM00463 |
| InterPro:Smr_dom | EnsemblPlantsGene:Solyc08g078150.1 | EnsemblPlants:Solyc08g078150.1.1 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI000276C8BB |
| SEG:seg | : | : | : | : | : |
Description
Pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Source:Projected from Arabidopsis thaliana (AT1G79490) UniProtKB/Swiss-Prot;Acc:Q9SAK0]
Coordinates
chr8:+:61976339..61978723
Molecular Weight (calculated)
89605.1 Da
IEP (calculated)
9.266
GRAVY (calculated)
-0.039
Length
794 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLFYRNLKH TRNLIEIYRS YHPFRNTAGS CDFNVKGPYF SSRYYCSGKS SDEWTEDVEY LDESGSVIYS GKGIRSVEPG LDDHVMVGGL KKPILNASAV
101: AKLVEIVKRW RWGPEMETQL DKLQFIPNMT HIMQALKVME DSDASLSLFR WAKRQPWYKP NDACYITLFD KLNQSRDFDG IQLVFDDMVL DSGENGASSL
201: FNAYNRVIQY LAKAEKFEVA FCCFKKIQES GCIVDTGTYN SLITVFLNNG LPYKAFEIYE NMEKAGCSLD ASSYELMIPS LAKSGRLDAA FKLFQQMKVS
301: NFRPGFGIFA SLVDSMGKAG RLDTSLKVYT EMQGFGFRPS ATMFVSLIES FVKAGKLETA LRLWDEMKKT GFRPNYGLYT MIVESHAKSG KLDVATSVFS
401: DMEKAGFLPT PSTYSSLLEM HAASGQVDAA MKLYNSMTNA GLRPGLSTYT ALLTLLAKKK LLDVSAKILL EMKAMGYSVD VNASDVLMVY IKDGSVDLAL
501: RWLRFMGSSA IRTNNFIIRQ LFESCMKSGA YEQAKPLLET YVNSAAKVDL ILYTSILAHL VRCQDENNER HLMSILSATR HKAHTFMCGL FTGPEQRKQP
601: VLTFVREFFQ GIDYELEEGA SRYFVNVLLN YLVLMGQINR ARCVWKVAYE NKLFPKAIVF DQHIAWSLDV RNLSVGAALV AVVHTLHRFR KRMLYYGVVP
701: RRIKLVTGPT LKIVVAQMLS SVESPFEVSK VVLRAPGDAV LDWFKKPIVQ QFLLNEIPSR ADILMHKLNI LFPTSAPEIR SLSPPKPIFA GKAM
101: AKLVEIVKRW RWGPEMETQL DKLQFIPNMT HIMQALKVME DSDASLSLFR WAKRQPWYKP NDACYITLFD KLNQSRDFDG IQLVFDDMVL DSGENGASSL
201: FNAYNRVIQY LAKAEKFEVA FCCFKKIQES GCIVDTGTYN SLITVFLNNG LPYKAFEIYE NMEKAGCSLD ASSYELMIPS LAKSGRLDAA FKLFQQMKVS
301: NFRPGFGIFA SLVDSMGKAG RLDTSLKVYT EMQGFGFRPS ATMFVSLIES FVKAGKLETA LRLWDEMKKT GFRPNYGLYT MIVESHAKSG KLDVATSVFS
401: DMEKAGFLPT PSTYSSLLEM HAASGQVDAA MKLYNSMTNA GLRPGLSTYT ALLTLLAKKK LLDVSAKILL EMKAMGYSVD VNASDVLMVY IKDGSVDLAL
501: RWLRFMGSSA IRTNNFIIRQ LFESCMKSGA YEQAKPLLET YVNSAAKVDL ILYTSILAHL VRCQDENNER HLMSILSATR HKAHTFMCGL FTGPEQRKQP
601: VLTFVREFFQ GIDYELEEGA SRYFVNVLLN YLVLMGQINR ARCVWKVAYE NKLFPKAIVF DQHIAWSLDV RNLSVGAALV AVVHTLHRFR KRMLYYGVVP
701: RRIKLVTGPT LKIVVAQMLS SVESPFEVSK VVLRAPGDAV LDWFKKPIVQ QFLLNEIPSR ADILMHKLNI LFPTSAPEIR SLSPPKPIFA GKAM
001: MIRGRTAKVI PRNVIFTLSR SSISESPLIS PSRINPKLAG SFSFNIRLLS YFTVRNGFCP DCSVPRDPNF VGLTTQCRSI VRRFCSEKIG SSESSGWTEE
101: VEYLDESGSV LHSGKGIRSV EPGLDDHVMV GGLKKPYMNA SSVAKIVEVV QRWKWGPELE TQLDKLQFVP NMVHITQSLK IVKEVDAALS LFRWAKKQPW
201: YLPSDECYVV LFDGLNQGRD FVGIQSLFEE MVQDSSSHGD LSFNAYNQVI QYLAKAEKLE VAFCCFKKAQ ESGCKIDTQT YNNLMMLFLN KGLPYKAFEI
301: YESMEKTDSL LDGSTYELII PSLAKSGRLD AAFKLFQQMK ERKLRPSFSV FSSLVDSMGK AGRLDTSMKV YMEMQGFGHR PSATMFVSLI DSYAKAGKLD
401: TALRLWDEMK KSGFRPNFGL YTMIIESHAK SGKLEVAMTV FKDMEKAGFL PTPSTYSCLL EMHAGSGQVD SAMKIYNSMT NAGLRPGLSS YISLLTLLAN
501: KRLVDVAGKI LLEMKAMGYS VDVCASDVLM IYIKDASVDL ALKWLRFMGS SGIKTNNFII RQLFESCMKN GLYDSARPLL ETLVHSAGKV DLVLYTSILA
601: HLVRCQDEDK ERQLMSILSA TKHKAHAFMC GLFTGPEQRK QPVLTFVREF YQGIDYELEE GAARYFVNVL LNYLVLMGQI NRARCVWKVA YENKLFPKAI
701: VFDQHIAWSL DVRNLSVGAA LIAVVHTLHR FRKRMLYYGV VPRRIKLVTG PTLKIVIAQM LSSVESPFEV SKVVLRAPGE LVMEWFKKPI VQQFLLNEIP
801: SRSDILMHKM NVMFPSSAPE LRSMSPPKPL MSSKAF
101: VEYLDESGSV LHSGKGIRSV EPGLDDHVMV GGLKKPYMNA SSVAKIVEVV QRWKWGPELE TQLDKLQFVP NMVHITQSLK IVKEVDAALS LFRWAKKQPW
201: YLPSDECYVV LFDGLNQGRD FVGIQSLFEE MVQDSSSHGD LSFNAYNQVI QYLAKAEKLE VAFCCFKKAQ ESGCKIDTQT YNNLMMLFLN KGLPYKAFEI
301: YESMEKTDSL LDGSTYELII PSLAKSGRLD AAFKLFQQMK ERKLRPSFSV FSSLVDSMGK AGRLDTSMKV YMEMQGFGHR PSATMFVSLI DSYAKAGKLD
401: TALRLWDEMK KSGFRPNFGL YTMIIESHAK SGKLEVAMTV FKDMEKAGFL PTPSTYSCLL EMHAGSGQVD SAMKIYNSMT NAGLRPGLSS YISLLTLLAN
501: KRLVDVAGKI LLEMKAMGYS VDVCASDVLM IYIKDASVDL ALKWLRFMGS SGIKTNNFII RQLFESCMKN GLYDSARPLL ETLVHSAGKV DLVLYTSILA
601: HLVRCQDEDK ERQLMSILSA TKHKAHAFMC GLFTGPEQRK QPVLTFVREF YQGIDYELEE GAARYFVNVL LNYLVLMGQI NRARCVWKVA YENKLFPKAI
701: VFDQHIAWSL DVRNLSVGAA LIAVVHTLHR FRKRMLYYGV VPRRIKLVTG PTLKIVIAQM LSSVESPFEV SKVVLRAPGE LVMEWFKKPI VQQFLLNEIP
801: SRSDILMHKM NVMFPSSAPE LRSMSPPKPL MSSKAF
Arabidopsis Description
EMB2217Pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAK0]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.