Factsheet for Os04t0612800-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27099	Sorghum	mitochondrion	87.99	87.33
Zm00001d002345_P001	Maize	mitochondrion	85.95	85.51
TraesCS2D01G422200.1	Wheat	mitochondrion	84.67	85.44
TraesCS2A01G424400.1	Wheat	mitochondrion	83.14	83.89
TraesCS2B01G444000.1	Wheat	plastid	84.29	81.48
HORVU2Hr1G099330.11	Barley	mitochondrion	71.39	72.04
GSMUA_Achr11P...	Banana	mitochondrion	58.62	61.45
KRH57615	Soybean	cytosol	54.41	58.52
Solyc08g078150.1.1	Tomato	nucleus	56.19	55.42
VIT_12s0028g00090.t01	Wine grape	plastid	56.7	55.36
PGSC0003DMT400067470	Potato	mitochondrion	56.07	55.29
KRG94011	Soybean	plastid	55.68	53.3
CDX79321	Canola	mitochondrion, plastid	56.07	53.21
Bra003609.1-P	Field mustard	mitochondrion, plastid	55.81	52.97
CDX67993	Canola	mitochondrion, plastid	54.28	51.83
AT1G79490.1	Thale cress	mitochondrion, plastid	55.17	51.67
Os03t0856100-01	Rice	plastid	16.6	20.31
Os03t0215900-00	Rice	plastid	16.22	18.79
Os12t0638900-01	Rice	mitochondrion	18.14	16.53

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:4336969	UniProt:A0A0P0WEN6	ProteinID:BAS90970.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0090305	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os04g0612800	EnsemblPlants:Os04t0612800-01
PFAM:PF01535	PFAM:PF13041	PFAM:PF17177	InterPro:PPR_long	PFscan:PS50828	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF326	InterPro:Pentatricopeptide_repeat	SMART:SM00463	InterPro:Smr_dom	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI00039387FA	RefSeq:XP_015635609.1	SEG:seg	:	:

Description

Similar to EMB2217. (Os04t0612800-01)

Coordinates

chr4:-:31073723..31076340

Molecular Weight (calculated)

85280.4 Da

IEP (calculated)

9.715

GRAVY (calculated)

0.170

Length

783 amino acids

Sequence
(BLAST)

001: MLLRVGLSRR RLTTAALPLS IAARGRRLST GPSPPPPPPA AEWTDTVDYL DESGEVLSSA PGARAAVPGA DATILSGSSA HPLPRPAAAA RLAALALRFR
101: SGPSLSAALS ALPSQPDPAL LLLAASSLPA SDPTPLLALV AWARVQPWFV PSDDLSSLLA ARLAPATHSS ELLSLFDDTL ALPDPAAFPK TLNAVLSALA
201: THGLLEPAFF CFKRLRDAGF RVLETHAYNA LLSLLLTRGL AFKAFEVLDE MSSSGCALDE GTYELVVPAL ARAGRIDAAR KMFDEMRKRE GIGRASAGMY
301: GVLVDVLAKA GRLDAAMGMY REMVAVGHRA SPAVSTAVVE GLVRAGKLDA GMELWEEMRR GGLRPSFGLY TMVVEANARS GRLDVATQLF GDMEKSGFFP
401: TPATYACLVE MHASAGQVDA AMRLYHSMAN AGQRPGLSTF TALLMMLANK RMLDLAAKVL LEMKASGFPI EVTASDLLMI YIKEGSTELA LRWLRFMGSA
501: GIRTNNFIIR QLFESCMKTG LYDSARPLLE TYVAGAAKVD LILYTSILAH LVRCQDEGRE RAIMDILSVS KHKAHDFMCG LFTGPEQRKK PVLSFVREFF
601: QGIDYDNEES AARYFVNVLL NYLVLMGQMN RARCIWKVAY ENKLFAKAIV FDQHIAWSLD VRNLSVGAAL VATVHTLHRF RKRMLYYGVV PRRIKLVTGP
701: TLKMVVAQVL ASLESPFEVS KVVLRAPGDS VLEWFKKPIV QQFLLNEIPS KADVLMHRLN VMFPSSAPEV RSLSIPRSLS MSR

Best Arabidopsis Sequence Match ( AT1G79490.1 )
(BLAST)

001: MIRGRTAKVI PRNVIFTLSR SSISESPLIS PSRINPKLAG SFSFNIRLLS YFTVRNGFCP DCSVPRDPNF VGLTTQCRSI VRRFCSEKIG SSESSGWTEE
101: VEYLDESGSV LHSGKGIRSV EPGLDDHVMV GGLKKPYMNA SSVAKIVEVV QRWKWGPELE TQLDKLQFVP NMVHITQSLK IVKEVDAALS LFRWAKKQPW
201: YLPSDECYVV LFDGLNQGRD FVGIQSLFEE MVQDSSSHGD LSFNAYNQVI QYLAKAEKLE VAFCCFKKAQ ESGCKIDTQT YNNLMMLFLN KGLPYKAFEI
301: YESMEKTDSL LDGSTYELII PSLAKSGRLD AAFKLFQQMK ERKLRPSFSV FSSLVDSMGK AGRLDTSMKV YMEMQGFGHR PSATMFVSLI DSYAKAGKLD
401: TALRLWDEMK KSGFRPNFGL YTMIIESHAK SGKLEVAMTV FKDMEKAGFL PTPSTYSCLL EMHAGSGQVD SAMKIYNSMT NAGLRPGLSS YISLLTLLAN
501: KRLVDVAGKI LLEMKAMGYS VDVCASDVLM IYIKDASVDL ALKWLRFMGS SGIKTNNFII RQLFESCMKN GLYDSARPLL ETLVHSAGKV DLVLYTSILA
601: HLVRCQDEDK ERQLMSILSA TKHKAHAFMC GLFTGPEQRK QPVLTFVREF YQGIDYELEE GAARYFVNVL LNYLVLMGQI NRARCVWKVA YENKLFPKAI
701: VFDQHIAWSL DVRNLSVGAA LIAVVHTLHR FRKRMLYYGV VPRRIKLVTG PTLKIVIAQM LSSVESPFEV SKVVLRAPGE LVMEWFKKPI VQQFLLNEIP
801: SRSDILMHKM NVMFPSSAPE LRSMSPPKPL MSSKAF

Arabidopsis Description

EMB2217Pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAK0]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.