Factsheet for Os03t0215900-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G079200.1	Wheat	plastid	77.22	75.87
TraesCS4B01G245000.1	Wheat	plastid	77.22	75.76
TraesCS4D01G244400.1	Wheat	plastid	76.18	74.85
EER92639	Sorghum	plastid	73.67	72.07
Zm00001d028221_P001	Maize	plastid	73.37	71.78
HORVU4Hr1G067600.1	Barley	nucleus	72.93	70.53
HORVU2Hr1G122510.2	Barley	cytosol	39.65	70.34
Solyc09g042290.1.1	Tomato	cytosol	34.32	56.86
CDY42535	Canola	cytosol	46.15	56.62
CDY22765	Canola	cytosol	45.71	56.08
Zm00001d025264_P001	Maize	mitochondrion, peroxisome	30.33	56.01
VIT_00s0194g00310.t01	Wine grape	cytosol, extracellular	17.46	53.39
GSMUA_Achr7P26730_001	Banana	plastid	43.79	52.11
VIT_00s0194g00270.t01	Wine grape	plastid	52.51	50.64
KRH51188	Soybean	nucleus	51.04	50.37
Solyc11g012670.1.1	Tomato	nucleus	49.85	48.91
CDY34461	Canola	plastid	50.59	48.86
Bra038453.1-P	Field mustard	plastid	50.3	48.78
PGSC0003DMT400034773	Potato	plastid	49.7	48.77
CDY32239	Canola	plastid	50.0	48.29
Bra040576.1-P	Field mustard	plastid	49.11	48.05
KRH01964	Soybean	nucleus	50.15	47.61
AT4G16390.1	Thale cress	plastid	48.52	46.72
KRH36593	Soybean	plastid	45.56	44.44
KRH36594	Soybean	plastid	45.12	43.26
KRH36591	Soybean	plastid	43.49	42.49
KRH11577	Soybean	plastid	43.34	42.4
Os03t0856100-01	Rice	plastid	32.69	34.53
KRH11579	Soybean	plastid	44.53	29.63
KRH36592	Soybean	plastid	42.6	28.12
KRH11578	Soybean	plastid	41.72	27.33
Os04t0612800-01	Rice	mitochondrion	18.79	16.22
Os12t0638900-01	Rice	mitochondrion	17.46	13.74

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:4332063	ProteinID:ABF94642.1	ProteinID:BAF11294.2	ProteinID:BAS82967.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006417	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009451	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0019538	GO:GO:0031425
GO:GO:0045727	GO:GO:0090305	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os03g0215900
EnsemblPlants:Os03t0215900-00	PFAM:PF12854	PFAM:PF13041	PFAM:PF17177	InterPro:PPR_long	PFscan:PS50828
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF437	InterPro:Pentatricopeptide_repeat	UniProt:Q10PZ4	SMART:SM00463
InterPro:Smr_dom	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0000DB4C9A	RefSeq:XP_015631289.1	SEG:seg

Description

pentatricopeptide repeat protein 676Similar to 67kD chloroplastic RNA-binding protein, P67. (Os03t0215900-00)

Coordinates

chr3:-:6089465..6091635

Molecular Weight (calculated)

73350.0 Da

IEP (calculated)

6.362

GRAVY (calculated)

-0.029

Length

676 amino acids

Sequence
(BLAST)

001: MASPSSLLSW PHRAISLSFQ PKNPSPSPAT ARVSVQDPPP PPSDANPSPG RSSNTSRYVW VNPNSPRAAG LARARAGSGR RARLAAAAAA LAACEAGEAP
101: VAAALEAAFP EPPSEQDAVI VLNTTSARPA AVVLALWWFL RNAEVRKEVI LYNVALKALR KRRRWSDAEA LWEEMLREGV QPDNATFSTV ISCARACGMP
201: GKAVEWFEKM PDFGCSPDML TYSAVIDAYG RAGDAETALR LYDRARAEKW QLDPVICATV IRVHSSSGNF DGALNVFEEM KAAGVKPNLV VYNTVLDAMG
301: RAMRPWVVKT IHRELVSQEA VPNKATYCCL LHAYTRARYG EDAMAVYRVM KDEVMDIDVV LYNMLLSMCA DIGYVEEAEE IFRDMKASMD SRSKPDSWSY
401: SSMVTLYSCT GNVAGAEGIL NEMVEAGFKP NIFILTSLIR CYGKAGRTDD VVRSFAMLED LGITPDDRFC GCLLTVAAGT PADELGKVIG CIDRSSAQLG
501: AVVRLLVDAA APSEPLREAA GELLGGARGV VRMPYCNCLM DLAVNLSQME KACALLDVAL RLGIYSNVQT RTQTQWSLHL RGLSVGAALT TLHVWMSDLY
601: AALQAGDELP PLLGIHTGQG KNTYSYKGLA TVFESHLKEL DAPFHEAPDK AGWFLTTSVA ARHWLETKKS AELVAV

Best Arabidopsis Sequence Match ( AT4G16390.1 )
(BLAST)

001: MSFHHLCSSP SSLLHDPLPL CNLLSVYPKS TPRSFLSSYN PNSSHFHSRN LLQATHVSVQ EAIPQSEKSK LVDVDLPIPE PTASKSYVWV NPKSPRASQL
101: RRKSYDSRYS SLIKLAESLD ACKPNEADVC DVITGFGGKL FEQDAVVTLN NMTNPETAPL VLNNLLETMK PSREVILYNV TMKVFRKSKD LEKSEKLFDE
201: MLERGIKPDN ATFTTIISCA RQNGVPKRAV EWFEKMSSFG CEPDNVTMAA MIDAYGRAGN VDMALSLYDR ARTEKWRIDA VTFSTLIRIY GVSGNYDGCL
301: NIYEEMKALG VKPNLVIYNR LIDSMGRAKR PWQAKIIYKD LITNGFTPNW STYAALVRAY GRARYGDDAL AIYREMKEKG LSLTVILYNT LLSMCADNRY
401: VDEAFEIFQD MKNCETCDPD SWTFSSLITV YACSGRVSEA EAALLQMREA GFEPTLFVLT SVIQCYGKAK QVDDVVRTFD QVLELGITPD DRFCGCLLNV
501: MTQTPSEEIG KLIGCVEKAK PKLGQVVKML VEEQNCEEGV FKKEASELID SIGSDVKKAY LNCLIDLCVN LNKLERACEI LQLGLEYDIY TGLQSKSATQ
601: WSLHLKSLSL GAALTALHVW MNDLSEAALE SGEEFPPLLG INTGHGKHKY SDKGLAAVFE SHLKELNAPF HEAPDKVGWF LTTSVAAKAW LESRRSAGGV
701: SA

Arabidopsis Description

P67Pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.