Factsheet for TraesCS4D01G244400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G079200.1	Wheat	plastid	91.13	91.13
TraesCS4B01G245000.1	Wheat	plastid	90.26	90.13
HORVU4Hr1G067600.1	Barley	nucleus	83.28	81.97
HORVU2Hr1G122510.2	Barley	cytosol	44.19	79.79
Os03t0215900-00	Rice	plastid	74.85	76.18
EER92639	Sorghum	plastid	74.27	73.95
Zm00001d028221_P001	Maize	plastid	72.97	72.65
Solyc09g042290.1.1	Tomato	cytosol	33.58	56.62
CDY42535	Canola	cytosol	44.91	56.08
Zm00001d025264_P001	Maize	mitochondrion, peroxisome	29.65	55.74
CDY22765	Canola	cytosol	44.62	55.72
VIT_00s0194g00310.t01	Wine grape	cytosol, extracellular	17.59	54.75
VIT_00s0194g00270.t01	Wine grape	plastid	51.45	50.5
GSMUA_Achr7P26730_001	Banana	plastid	41.28	50.0
Solyc11g012670.1.1	Tomato	nucleus	49.27	49.2
KRH51188	Soybean	nucleus	48.84	49.05
PGSC0003DMT400034773	Potato	plastid	48.98	48.91
Bra038453.1-P	Field mustard	plastid	48.98	48.35
Bra040576.1-P	Field mustard	plastid	48.4	48.19
CDY34461	Canola	plastid	48.84	48.0
CDY32239	Canola	plastid	48.84	48.0
KRH01964	Soybean	nucleus	48.69	47.05
AT4G16390.1	Thale cress	plastid	47.24	46.3
KRH36593	Soybean	plastid	45.35	45.02
KRH11577	Soybean	plastid	43.31	43.13
KRH36591	Soybean	plastid	43.02	42.77
KRH36594	Soybean	plastid	42.88	41.84
TraesCS5D01G565800.1	Wheat	mitochondrion, plastid	32.27	29.96
KRH11579	Soybean	plastid	43.46	29.43
KRH36592	Soybean	plastid	41.42	27.83
KRH11578	Soybean	plastid	41.42	27.62
TraesCS2D01G422200.1	Wheat	mitochondrion	17.59	15.59
TraesCS5D01G012800.1	Wheat	mitochondrion	18.75	15.16

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002625
InterPro:IPR002885	InterPro:IPR011990	PFAM:PF13041	PFAM:PF13812	PFAM:PF17177	InterPro:PPR_long
PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF437	InterPro:Pentatricopeptide_repeat	SMART:SM00463
InterPro:Smr_dom	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	EnsemblPlantsGene:TraesCS4D01G244400	EnsemblPlants:TraesCS4D01G244400.1	SEG:seg

Description

No Description!

Coordinates

chr4D:-:409145067..409147133

Molecular Weight (calculated)

74968.0 Da

IEP (calculated)

6.437

GRAVY (calculated)

-0.087

Length

688 amino acids

Sequence
(BLAST)

001: MASLPICPSS PSSFLSWPHR PISLSFQPKN HSSSASPAAA HVSVQDSPPQ DPAPPSDPGQ NPKISSTAKF LWVNPNSPRA AELARARAGS GRRARLAAAA
101: AALAACEPAE APVAAALEAA FPEAPSEQDA AIVLNTAAGN PATAVLALRW FLENAEVRSK VILYNVVFKV LRNRRRWSET EALWDAMLRD GVQPDNTTFS
201: TVISCARACG PPGKAVEWFE KMPESGCSPD MLTYSVVIDA YGRAGDAEMA LRLYDRARSE RCQLDPVICA TVIKVHSTSG NFDGALNVFE EMKAVGVKPN
301: LVVYNTVLDA MGRAMRPWVV KTIHREMVSQ KVQPNRATYC CLLQAYTRAR YGEDAMIVYR KMKDEVMDID VVLYNMLLSM CADIGYVDEA EEIFRDMKSS
401: MDTKCKPDSW TYSSMVTLYS CTGNVPGAEA ILKEMAEAGF KPNIFILTSL TRCYGKAGCT DDVVRSFGML KELKITPDDR FCGCLLTVAA DTPVEELGKV
501: VDCIDRSNAE LGTVVKLLAD RKASTESFKE AARGILSGAR GVVKMPYCNC LMDLCINLGQ MEKACALLDA ALQLDIYSNV QTRTQTQWSL HLRGLSVGAA
601: LTTLHVWMND LYTTLQSGEE LPPLLGIHTG EGRNMYSDKG LASVFESHLK ELDAPFHGAP DKAGWFLTTS VAAKHWLEAK KSSELVAV

Best Arabidopsis Sequence Match ( AT4G16390.1 )
(BLAST)

001: MSFHHLCSSP SSLLHDPLPL CNLLSVYPKS TPRSFLSSYN PNSSHFHSRN LLQATHVSVQ EAIPQSEKSK LVDVDLPIPE PTASKSYVWV NPKSPRASQL
101: RRKSYDSRYS SLIKLAESLD ACKPNEADVC DVITGFGGKL FEQDAVVTLN NMTNPETAPL VLNNLLETMK PSREVILYNV TMKVFRKSKD LEKSEKLFDE
201: MLERGIKPDN ATFTTIISCA RQNGVPKRAV EWFEKMSSFG CEPDNVTMAA MIDAYGRAGN VDMALSLYDR ARTEKWRIDA VTFSTLIRIY GVSGNYDGCL
301: NIYEEMKALG VKPNLVIYNR LIDSMGRAKR PWQAKIIYKD LITNGFTPNW STYAALVRAY GRARYGDDAL AIYREMKEKG LSLTVILYNT LLSMCADNRY
401: VDEAFEIFQD MKNCETCDPD SWTFSSLITV YACSGRVSEA EAALLQMREA GFEPTLFVLT SVIQCYGKAK QVDDVVRTFD QVLELGITPD DRFCGCLLNV
501: MTQTPSEEIG KLIGCVEKAK PKLGQVVKML VEEQNCEEGV FKKEASELID SIGSDVKKAY LNCLIDLCVN LNKLERACEI LQLGLEYDIY TGLQSKSATQ
601: WSLHLKSLSL GAALTALHVW MNDLSEAALE SGEEFPPLLG INTGHGKHKY SDKGLAAVFE SHLKELNAPF HEAPDKVGWF LTTSVAAKAW LESRRSAGGV
701: SA

Arabidopsis Description

P67Pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.