Factsheet for VIT_00s0194g00310.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g042290.1.1	Tomato	cytosol	66.97	36.27
VIT_00s0194g00270.t01	Wine grape	plastid	95.93	30.24
CDY22765	Canola	cytosol	66.97	26.86
CDY42535	Canola	cytosol	66.97	26.86
Solyc11g012670.1.1	Tomato	nucleus	69.68	22.35
KRH51188	Soybean	nucleus	68.78	22.19
PGSC0003DMT400034773	Potato	plastid	68.78	22.06
Bra038453.1-P	Field mustard	plastid	68.78	21.81
CDY32239	Canola	plastid	68.78	21.71
CDY34461	Canola	plastid	68.33	21.57
KRH01964	Soybean	nucleus	69.23	21.49
Bra040576.1-P	Field mustard	plastid	66.52	21.27
AT4G16390.1	Thale cress	plastid	67.42	21.23
HORVU2Hr1G122510.2	Barley	cytosol	34.84	20.21
KRH36593	Soybean	plastid	62.9	20.06
KRH36594	Soybean	plastid	61.99	19.43
KRH11577	Soybean	plastid	59.73	19.1
KRH36591	Soybean	plastid	59.73	19.08
HORVU4Hr1G067600.1	Barley	nucleus	55.66	17.6
TraesCS4D01G244400.1	Wheat	plastid	54.75	17.59
TraesCS4A01G079200.1	Wheat	plastid	54.75	17.59
TraesCS4B01G245000.1	Wheat	plastid	54.75	17.56
Os03t0215900-00	Rice	plastid	53.39	17.46
Zm00001d028221_P001	Maize	plastid	53.39	17.08
EER92639	Sorghum	plastid	53.39	17.08
KRH11579	Soybean	plastid	63.35	13.78
KRH36592	Soybean	plastid	62.9	13.57
KRH11578	Soybean	plastid	61.09	13.08
GSMUA_Achr7P26730_001	Banana	plastid	32.13	12.5
VIT_02s0012g01090.t01	Wine grape	plastid	38.46	11.76
Zm00001d025264_P001	Maize	mitochondrion, peroxisome	15.38	9.29
VIT_17s0000g05510.t01	Wine grape	endoplasmic reticulum	19.46	4.79
VIT_12s0028g00090.t01	Wine grape	plastid	16.29	4.49

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ProteinID:CCB50062	ProteinID:CCB50062.1	UniProt:F6HCW7	EMBL:FN595527
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016787	GO:GO:0031425	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF437	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002109E06	ArrayExpress:VIT_00s0194g00310	EnsemblPlantsGene:VIT_00s0194g00310	EnsemblPlants:VIT_00s0194g00310.t01
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:10756517..10769646

Molecular Weight (calculated)

24524.7 Da

IEP (calculated)

4.078

GRAVY (calculated)

0.104

Length

221 amino acids

Sequence
(BLAST)

001: MKEKGLELSV VLYNTLLAMC ADVGYTEEAA AIFEDMKSSG NCMPDSWTFS SLITIYSCSG KVPEAEAMLN AMLEAGFEPN IFVLTSLIQC YGKANRTDEV
101: VRTFDRLLEL DITPDDRFCG CMLNVMTQSP KEELGKLIDC IDKANPKLGN VVKLLLEEQN GEGTFRKEAS ELFDSISADV KKAYCNCLID LCVNLNLLEK
201: ACELFDLGLT LEIYIDIQSC L

Best Arabidopsis Sequence Match ( AT4G16390.1 )
(BLAST)

001: MSFHHLCSSP SSLLHDPLPL CNLLSVYPKS TPRSFLSSYN PNSSHFHSRN LLQATHVSVQ EAIPQSEKSK LVDVDLPIPE PTASKSYVWV NPKSPRASQL
101: RRKSYDSRYS SLIKLAESLD ACKPNEADVC DVITGFGGKL FEQDAVVTLN NMTNPETAPL VLNNLLETMK PSREVILYNV TMKVFRKSKD LEKSEKLFDE
201: MLERGIKPDN ATFTTIISCA RQNGVPKRAV EWFEKMSSFG CEPDNVTMAA MIDAYGRAGN VDMALSLYDR ARTEKWRIDA VTFSTLIRIY GVSGNYDGCL
301: NIYEEMKALG VKPNLVIYNR LIDSMGRAKR PWQAKIIYKD LITNGFTPNW STYAALVRAY GRARYGDDAL AIYREMKEKG LSLTVILYNT LLSMCADNRY
401: VDEAFEIFQD MKNCETCDPD SWTFSSLITV YACSGRVSEA EAALLQMREA GFEPTLFVLT SVIQCYGKAK QVDDVVRTFD QVLELGITPD DRFCGCLLNV
501: MTQTPSEEIG KLIGCVEKAK PKLGQVVKML VEEQNCEEGV FKKEASELID SIGSDVKKAY LNCLIDLCVN LNKLERACEI LQLGLEYDIY TGLQSKSATQ
601: WSLHLKSLSL GAALTALHVW MNDLSEAALE SGEEFPPLLG INTGHGKHKY SDKGLAAVFE SHLKELNAPF HEAPDKVGWF LTTSVAAKAW LESRRSAGGV
701: SA

Arabidopsis Description

P67Pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.