Factsheet for VIT_12s0028g00090.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57615	Soybean	cytosol	74.31	81.87
Solyc08g078150.1.1	Tomato	nucleus	79.8	80.6
PGSC0003DMT400067470	Potato	mitochondrion	79.8	80.6
KRG94011	Soybean	plastid	77.68	76.16
CDX79321	Canola	mitochondrion, plastid	76.06	73.94
Bra003609.1-P	Field mustard	mitochondrion, plastid	75.94	73.82
AT1G79490.1	Thale cress	mitochondrion, plastid	76.93	73.8
CDX67993	Canola	mitochondrion, plastid	74.56	72.93
GSMUA_Achr11P...	Banana	mitochondrion	59.35	63.72
TraesCS2D01G422200.1	Wheat	mitochondrion	55.86	57.73
Os04t0612800-01	Rice	mitochondrion	55.36	56.7
KXG27099	Sorghum	mitochondrion	55.74	56.65
TraesCS2A01G424400.1	Wheat	mitochondrion	54.24	56.06
Zm00001d002345_P001	Maize	mitochondrion	54.86	55.91
TraesCS2B01G444000.1	Wheat	plastid	56.11	55.56
HORVU2Hr1G099330.11	Barley	mitochondrion	51.75	53.48
VIT_02s0012g01090.t01	Wine grape	plastid	15.96	17.7
VIT_00s0194g00270.t01	Wine grape	plastid	15.21	17.4
VIT_17s0000g05510.t01	Wine grape	endoplasmic reticulum	18.7	16.7
VIT_00s0194g00310.t01	Wine grape	cytosol, extracellular	4.49	16.29

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100259080	wikigene:100259080	MapMan:35.1	ProteinID:CCB47471	ProteinID:CCB47471.1
UniProt:F6H5C4	EMBL:FN595235	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	InterPro:IPR002625	InterPro:IPR002885
InterPro:IPR011990	EntrezGene:LOC100259080	wikigene:LOC100259080	PFAM:PF13041	PFAM:PF13812	PFAM:PF17177
InterPro:PPR_long	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF326	InterPro:Pentatricopeptide_repeat
SMART:SM00463	InterPro:Smr_dom	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000210A097	ArrayExpress:VIT_12s0028g00090
EnsemblPlantsGene:VIT_12s0028g00090	EnsemblPlants:VIT_12s0028g00090.t01	unigene:Vvi.16880	RefSeq:XP_002279656	RefSeq:XP_002279656.1	SEG:seg

Description

No Description!

Coordinates

chr12:-:739818..742398

Molecular Weight (calculated)

90096.6 Da

IEP (calculated)

8.967

GRAVY (calculated)

-0.019

Length

802 amino acids

Sequence
(BLAST)

001: MFTSSFQASN IHNPNFINPF LFSLKARNPS PIFINFSRAF CSGNHHQNSN RSTSSSDWNQ EDVEYLDESG SVIFTGKGVR SVDPGLDDHV MVGGLKKPFL
101: NVSAVAKIVE IVNRWRWGPE LETQLDKLHF VPNMSHVIQA LKIVTDTDAS LSLFRWAKRQ PWYSMLNDEC YALLFDRLNQ SRDFDAIQSL FDEMIRDSGD
201: NNGVSSVIAC NQVVRDLAKA EKLEVAFCCF KKVQDSGCKI DTATYNSLIT LFLNKGLPYK AFEVYESMEA AGCLLDGSTY ELMIPSLAKS GRLDAAFKLF
301: QEMKEKNLRP SFLVFASLVD SMGKAGRLDT SMKVYMEMQG FGLRPSATMY VSLIESFVKA GKLETALRIW DEMKKAGFRP NYGLYTMVVE SHAKSGKLET
401: AMSVFSDMEK AGFLPTPSTY SCLLEMHSAS GQVDSAMKLY NSMTNAGLRP GLSTYTALLT LLANKKLVDV AAKVLLEMKA MGFSVDVSAS DVLMVYIKDG
501: SVDLALRWLR FMGSSGIRTN NFIIRQLFES CMKNGLYESA KPLLETYVNS AAKVDLILYT SILAHLVRCQ EEQNERHLML ILSATKHKAH TFMCGLFTGP
601: EQRKQPVLSF VREFFQSVDY ELEEGAARYF VNVLLNYLVL MGQINRARCV WKVAYENKLF PKAIVFDQHI AWSLDVRNLS VGAALVAVVH TLHRFRKRML
701: YYGVVPRRIK LVTGPTLKIV VAQMLNSVES PFEVSKVVLR APGDSVMEWF KKPIVQQFLI NEIPSRADIL MHKLNTLFPS SAPEIRSLSP PKPLISGKAM
801: SP

Best Arabidopsis Sequence Match ( AT1G79490.1 )
(BLAST)

001: MIRGRTAKVI PRNVIFTLSR SSISESPLIS PSRINPKLAG SFSFNIRLLS YFTVRNGFCP DCSVPRDPNF VGLTTQCRSI VRRFCSEKIG SSESSGWTEE
101: VEYLDESGSV LHSGKGIRSV EPGLDDHVMV GGLKKPYMNA SSVAKIVEVV QRWKWGPELE TQLDKLQFVP NMVHITQSLK IVKEVDAALS LFRWAKKQPW
201: YLPSDECYVV LFDGLNQGRD FVGIQSLFEE MVQDSSSHGD LSFNAYNQVI QYLAKAEKLE VAFCCFKKAQ ESGCKIDTQT YNNLMMLFLN KGLPYKAFEI
301: YESMEKTDSL LDGSTYELII PSLAKSGRLD AAFKLFQQMK ERKLRPSFSV FSSLVDSMGK AGRLDTSMKV YMEMQGFGHR PSATMFVSLI DSYAKAGKLD
401: TALRLWDEMK KSGFRPNFGL YTMIIESHAK SGKLEVAMTV FKDMEKAGFL PTPSTYSCLL EMHAGSGQVD SAMKIYNSMT NAGLRPGLSS YISLLTLLAN
501: KRLVDVAGKI LLEMKAMGYS VDVCASDVLM IYIKDASVDL ALKWLRFMGS SGIKTNNFII RQLFESCMKN GLYDSARPLL ETLVHSAGKV DLVLYTSILA
601: HLVRCQDEDK ERQLMSILSA TKHKAHAFMC GLFTGPEQRK QPVLTFVREF YQGIDYELEE GAARYFVNVL LNYLVLMGQI NRARCVWKVA YENKLFPKAI
701: VFDQHIAWSL DVRNLSVGAA LIAVVHTLHR FRKRMLYYGV VPRRIKLVTG PTLKIVIAQM LSSVESPFEV SKVVLRAPGE LVMEWFKKPI VQQFLLNEIP
801: SRSDILMHKM NVMFPSSAPE LRSMSPPKPL MSSKAF

Arabidopsis Description

EMB2217Pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAK0]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.